Research

We are building modelling collaborations to address a broad research agenda focused on high priority scientific themes. CANMOD is funding researchers across the themes described below, and will also open a responsive process wherein members of our community can request funding for activities that align with our broad research aims.

Publications Research Themes

Publications by CANMOD Members

Title CANMOD Authors Source
Evidence with 95-95-95 that ambitious is feasible Mathieu Maheu-Giroux, Sharmistha Mishra The Lancet HIV
Impact of new direct-acting antiviral therapy on the prevalence and undiagnosed proportion of chronic hepatitis C infection Naveed Janjua Liver International
Snapshot of cyanobacterial toxins in Pakistani freshwater bodies Jesse Shapiro Environmental Science and Pollution Research
Effects of group size and population size on the evolutionary stability of cooperation David Earn Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
Nasopharyngeal angiotensin converting enzyme 2 (ACE2) expression as a risk-factor for SARS-CoV-2 transmission in concurrent hospital associated outbreaks Natalie Prystajecky BMC Infectious Diseases
Estimated mortality risk and use of palliative care services among home care clients during the last 6 months of life: a retrospective cohort study Doug Manuel CMAJ. Canadian Medical Association Journal
Hepatitis C Attributable Healthcare Costs and Mortality among Immigrants: A Population-Based Matched Cohort Study Naveed Janjua Canadian Journal of Gastroenterology and Hepatology
Impact of community mask mandates on SARS-CoV-2 transmission in Ontario after adjustment for differential testing by age and sex David Fisman, Ashleigh Tuite PNAS Nexus
Weakly nonlinear analysis of a two-species non-local advection–diffusion system Mark Lewis Nonlinear Analysis: Real World Applications
Protection of prior SARS-CoV-2 infection, COVID-19 boosters, and hybrid immunity against Omicron severe illness: A population-based cohort study of five million residents in Canada Sharmistha Mishra PLoS ONE
Redefining pandemic preparedness: Multidisciplinary insights from the CERP modelling workshop in infectious diseases, workshop report Julien Arino Infectious Disease Modelling
Longitudinal Analysis of Mpox Virus DNA Detectability From Multiple Specimen Types During Acute Illness: A Cohort Study Sharmistha Mishra Open Forum Infectious Diseases
Cohort profile: the British Columbia COVID-19 Cohort (BCC19C)—a dynamic, linked population-based cohort Naveed Janjua Frontiers in Public Health
Estimating the mortality risk correcting for high loss to follow-up among female sex workers with HIV in Durban, South Africa, 2018-2021 Sharmistha Mishra Annals of Epidemiology
A multiprovincial retrospective analysis of the incidence of myocarditis or pericarditis after mRNA vaccination compared to the incidence after SARS-CoV-2 infection Naveed Janjua Heliyon
More Than a Decade Since the Latest CONSORT Non-inferiority Trials Extension: Do Infectious Diseases Trials Do Enough? Mark Loeb Clinical Infectious Diseases
An Evaluation of the Impact of an OPEN Stewardship Generated Feedback Intervention on Antibiotic Prescribing among Primary Care Veterinarians in Canada and Israel David Fisman, Amy Greer Animals
Ethnic Disparities in COVID-19 Vaccine Mistrust and Receipt in British Columbia, Canada: Population Survey Naveed Janjua JMIR public health and surveillance
When and how can we predict adaptive responses to climate change? Sarah Otto Evolution Letters
On the fast track: hybrids adapt more rapidly than parental populations in a novel environment Sarah Otto Evolution Letters
The role of vaccine status homophily in the COVID-19 pandemic: a cross-sectional survey with modelling Caroline Colijn BMC Public Health
Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation Doug Manuel Scientific reports
COVID-19 vaccines and adverse events of special interest: A multinational Global Vaccine Data Network (GVDN) cohort study of 99 million vaccinated individuals Naveed Janjua Vaccine
Forecasting seasonal influenza activity in Canada—Comparing seasonal Auto-Regressive integrated moving average and artificial neural network approaches for public health preparedness Amy Greer Zoonoses and Public Health
Protocol for the Mpox Prospective Observational Cohort Study (MPOCS) among individuals with mpox in Canada Sharmistha Mishra Future Virology
TKSM: highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator Cedric Chauve Bioinformatics (Oxford, England)
Communicating About Precision Transplantation Tools Timothy Caulfield Canadian Journal of Kidney Health and Disease
Predicting Imminent Cyanobacterial Blooms in Lakes Using Incomplete Timely Data Mark Lewis Water Resources Research
Using Exploratory Structural Equation Modeling to Examine Caregiver Distress and Its Contributors Doug Manuel Journal of the American Medical Directors Association
Real-Time Epidemiology and Acute Care Need Monitoring and Forecasting for COVID-19 via Bayesian Sequential Monte Carlo-Leveraged Transmission Models Nathaniel Osgood International journal of environmental research and public health
Disease-modifying therapy use and health resource utilisation associated with multiple sclerosis over time: A retrospective cohort study from Alberta, Canada Tyler Williamson Journal of the Neurological Sciences
Modelling approaches to borders, geography, and infectious diseases David Fisman Pandemics, Public Health, and the Regulation of Borders: Lessons from COVID-19
Examining the Influence of Imbalanced Social Contact Matrices in Epidemic Models Sharmistha Mishra American Journal of Epidemiology
Enhancing detection of SARS-CoV-2 re-infections using longitudinal sero-monitoring: demonstration of a methodology in a cohort of people experiencing homelessness in Toronto, Canada Sharmistha Mishra BMC Infectious Diseases
Mutualism at the leading edge: insights into the eco-evolutionary dynamics of host-symbiont communities during range expansion Rebecca Tyson Journal of Mathematical Biology
Estimating the population effectiveness of interventions against COVID-19 in France: A modelling study David Buckeridge Epidemics
Clinical and Socioeconomic Associations With Hospital Days and Emergency Department Visits Among Medically Complex Children: A Retrospective Cohort Study Jeff Round Hospital Pediatrics
Equitable Allocation of Scarce Resources During the Covid-19 Pandemic: A Case Study for Convalescent Plasma Distribution Alexander Rutherford Proceedings - Winter Simulation Conference
The probability of epidemic burnout in the stochastic SIR model with vital dynamics Benjamin Bolker, Jonathan Dushoff, David Earn Proceedings of the National Academy of Sciences of the United States of America
Targeted genomic sequencing of avian influenza viruses in wetland sediment from wild bird habitats Natalie Prystajecky Applied and Environmental Microbiology
Social network risk factors and COVID-19 vaccination: A cross-sectional survey study Tyler Williamson Vaccine
Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup Julien Arino PLoS Computational Biology
Mastering percolation-like games with deep learning Sean Cornelius Physical Review Research
Prospective, clinical comparison of self-collected throat-bilateral nares swabs and saline gargle compared to health care provider collected nasopharyngeal swabs among symptomatic outpatients with potential SARS-CoV-2 infection Natalie Prystajecky JAMMI
Factors associated with SARS-CoV-2 infection in unvaccinated children and young adults Daniel Coombs BMC Infectious Diseases
A Bayesian framework for modeling COVID-19 case numbers through longitudinal monitoring of SARS-CoV-2 RNA in wastewater Tyler Williamson Statistics in Medicine
Risk factors for recognized and unrecognized SARS-CoV-2 infection: a seroepidemiologic analysis of the Prospective Urban Rural Epidemiology (PURE) study Mark Loeb Microbiology Spectrum
A comprehensive, open-source data model for wastewater-based epidemiology Doug Manuel Water science and technology : a journal of the International Association on Water Pollution Research
Simultaneous estimation of the temporal and spatial extent of animal migration using step lengths and turning angles Mark Lewis Movement Ecology
Comparison of Empirically Derived and Model-Based Estimates of Key Population HIV Incidence and the Distribution of New Infections by Population Group in Sub-Saharan Africa Mathieu Maheu-Giroux, Sharmistha Mishra Journal of Acquired Immune Deficiency Syndromes
Temporal Trends and Determinants of HIV Testing at Antenatal Care in Sub-Saharan Africa: A Pooled Analysis of Population-Based Surveys (2005–2021) Mathieu Maheu-Giroux Journal of Acquired Immune Deficiency Syndromes
Measuring HIV Acquisitions among Partners of Key Populations: Estimates from HIV Transmission Dynamic Models Mathieu Maheu-Giroux, Sharmistha Mishra Journal of Acquired Immune Deficiency Syndromes
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes Jesse Shapiro Nature Ecology and Evolution
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients Jesse Shapiro Microbiology Spectrum
Development and validation of a farm-and province-level swine flow simulation model using discrete events and Ontario swine farm and provincial input data Amy Greer Canadian Journal of Veterinary Research
Long-Term Dynamics of COVID-19 in a Multi-strain Model Caroline Colijn Fields Institute Communications
Contact Matrices in Compartmental Disease Transmission Models Sharmistha Mishra Fields Institute Communications
Agent-Based Modeling and Its Trade-Offs: An Introduction and Examples Nathaniel Osgood Fields Institute Communications
A Categorical Framework for Modeling with Stock and Flow Diagrams Nathaniel Osgood Fields Institute Communications
Treatment of HCV with direct-acting antivirals on reducing mortality related to extrahepatic manifestations: a large population-based study in British Columbia, Canada Naveed Janjua Lancet Regional Health - Americas
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling Caroline Colijn, Alexander Rutherford PLoS Computational Biology
Early childhood trajectories of domain-specific developmental delay and gestational age at birth: An analysis of the All Our Families cohort Tyler Williamson PLoS ONE
The portrayal of organ donation on TikTok: A content analysis of popular English-language TikTok videos Timothy Caulfield Digital Health
Machine Learning Informed Diagnosis for Congenital Heart Disease in Large Claims Data Source David Buckeridge JACC: Advances
SARS-CoV-2 Incubation Period during Omicron BA.5-Dominant Period, Japan Jonathan Dushoff Emerging infectious diseases
Pandemic Effect on Healthcare Use and Death in Adults with Epilepsy: A Population Study Doug Manuel Canadian Journal of Neurological Sciences
Trends in outpatient and inpatient visits for separate ambulatory-care-sensitive conditions during the first year of the COVID-19 pandemic: a province-based study Doug Manuel Frontiers in Public Health
SARS-CoV-2 Exposures at a Large Gathering Event and Acquisition of COVID-19 in the Post-Vaccination Era: A Randomized Trial Is Possible During the Pandemic Mark Loeb Clinical Infectious Diseases
Improved vaccine coverage for First Nations children receiving first dose on-reserve: A retrospective cohort study in western Canada Larry Svenson BMJ Global Health
Medication use of Canadians with chronic obstructive pulmonary disease: A cohort study Tyler Williamson BMJ Open Respiratory Research
An integrated newborn care kit (iNCK) to save newborn lives and improve health outcomes in Gilgit Baltistan (GB), Pakistan: study protocol for a cluster randomized controlled trial Diego Bassani BMC Public Health
Conduct and reporting of multivariate network meta-analyses: a scoping review Mark Loeb Journal of Clinical Epidemiology
Capturing diversity: Split systems and circular approximations for conservation Caroline Colijn, Paul Tupper Journal of Theoretical Biology
Exploring the dynamics of the 2022 mpox outbreak in Canada Michael WZ Li, Mathieu Maheu-Giroux, Sharmistha Mishra Journal of Medical Virology
Population-level effectiveness of pre-exposure prophylaxis for HIV prevention among men who have sex with men in Montréal (Canada): a modelling study of surveillance and survey data Mathieu Maheu-Giroux, Sharmistha Mishra Journal of the International AIDS Society
Associations between human milk oligosaccharides and infant growth in a Bangladeshi mother–infant cohort Diego Bassani Pediatric Research
Schrödinger's yeast: the challenge of using transformation to compare fitness among Saccharomyces cerevisiae that differ in ploidy or zygosity Sarah Otto PeerJ
Single-Cell Sequencing of Lung Macrophages and Monocytes Reveals Novel Therapeutic Targets in COPD Xuekui Zhang Cells
Logical Inconsistencies in the Health Years in Total and Equal Value of Life-Years Gained Christopher McCabe Value in Health
A method to estimate the serial interval distribution under partially-sampled data Caroline Colijn, Paul Tupper Epidemics
Data extraction and comparison for complex systematic reviews: a step-by-step guideline and an implementation example using open-source software Javier Sanchez Systematic Reviews
Food insecurity in Yukon communities during COVID-19: A qualitative study Sara McPhee-Knowles Journal of Agriculture, Food Systems, and Community Development
Adjusted estimate of the prevalence of hepatitis delta virus in 25 countries and territories Naveed Janjua Journal of Hepatology
Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty Dean Karlen Nature Communications
Nurse practitioner and physician end-of-life home visits and end-of-life outcomes Doug Manuel BMJ Supportive and Palliative Care
Predicting the Temperature-Driven Development of Stage-Structured Insect Populations with a Bayesian Hierarchical Model Benjamin Bolker Journal of Agricultural, Biological, and Environmental Statistics
A promising biomarker adaptive Phase 2/3 design – Explained and expanded Xuekui Zhang Contemporary Clinical Trials Communications
Prevalence and patterns of multimorbidity among linguistic groups of patients receiving home care in Ontario: a retrospective cohort study Doug Manuel BMC Geriatrics
Association of naturally acquired type-specific HPV antibodies and subsequent HPV re-detection: systematic review and meta-analysis Marc Brisson, Mathieu Maheu-Giroux Infectious Agents and Cancer
Effective population size in simple infectious disease models Caroline Colijn Journal of Mathematical Biology
Density-Dependent Selection during Range Expansion Affects Expansion Load in Life History Traits Sarah Otto American Naturalist
Phylogenetic identification of influenza virus candidates for seasonal vaccines Caroline Colijn Science advances
Qualitative Interviews to Add Patient Perspectives in Colorectal Cancer Screening: Improvements in a Learning Health System Nathaniel Osgood Journal of Cancer Education
Protocol for a longitudinal cohort study of Lyme disease with physical, mental and immunological assessment Mark Loeb BMJ open
COVID-19 vaccine effectiveness by HIV status and history of injection drug use: a test-negative analysis Naveed Janjua Journal of the International AIDS Society
Health data governance for research use in Alberta Tyler Williamson International Journal of Population Data Science
Modelling the impacts of male alternative reproductive tactics on population dynamics David Earn Journal of the Royal Society, Interface
A cross-sectional survey exploring HIV and HCV prevalence among men who purchase sex in Dnipro, Ukraine Sharmistha Mishra BMC Public Health
Correction: Development and validation of a case definition for problematic menopause in primary care electronic medical records (BMC Medical Informatics and Decision Making, (2023), 23, 1, (202), 10.1186/s12911-023-02298-x) Tyler Williamson BMC Medical Informatics and Decision Making
Community Insights in Phylogenetic HIV Research: The CIPHR Project Protocol Sharmistha Mishra Global Public Health
Correction: Can HIV self-testing reach first-time testers? A telephone survey among self-test end users in Côte d’Ivoire, Mali, and Senegal (BMC Infectious Diseases, (2023), 22, S1, (972), 10.1186/s12879-023-08626-w) Mathieu Maheu-Giroux BMC Infectious Diseases
Machine Learning for the Prediction of Survival Post-Allogeneic Hematopoietic Cell Transplantation: A Single-Center Experience Dionne Aleman Acta Haematologica
From bench to bedside, 2-in-1 design expedites phase 2/3 oncology drug development Xuekui Zhang Frontiers in Oncology
plASgraph2: using graph neural networks to detect plasmid contigs from an assembly graph Cedric Chauve Frontiers in Microbiology
Development and validation of a case definition for problematic menopause in primary care electronic medical records Tyler Williamson BMC Medical Informatics and Decision Making
Coupling Mountain Pine Beetle and Forest Population Dynamics Predicts Transient Outbreaks that are Likely to Increase in Number with Climate Change Mark Lewis Bulletin of Mathematical Biology
Potential population-level effectiveness of one-dose HPV vaccination in low-income and middle-income countries: a mathematical modelling analysis Marc Brisson The Lancet Public Health
Ethically cleared to launch? Timothy Caulfield Science
Generic Health Utility Measures in Exercise Oncology: A Scoping Review and Future Directions Jeff Round Current Oncology
We need to talk about values: A proposed framework for the articulation of normative reasoning in health technology assessment Christopher McCabe Health Economics, Policy and Law
Can HIV self-testing reach first-time testers? A telephone survey among self-test end users in Côte d’Ivoire, Mali, and Senegal Mathieu Maheu-Giroux BMC Infectious Diseases
Emergence of SARS-CoV-2 Delta Variant and Effect of Nonpharmaceutical Interventions, British Columbia, Canada Natalie Prystajecky Emerging infectious diseases
Catch-22s of reservoir computing Sean Cornelius Physical Review Research
ADSP: An adaptive sample pooling strategy for diagnostic testing Xuekui Zhang Journal of Biomedical Informatics
Demographic and psychometric predictors associated with engagement in risk-associated alternative healthcare behaviours Timothy Caulfield PloS one
Modelling the transmission of dengue, zika and chikungunya: a scoping review protocol Julien Arino BMJ open
Protocol for a living evidence synthesis on variants of concern and COVID-19 vaccine effectiveness Caroline Colijn, David Earn Vaccine
Adverse childhood experiences: a meta-analysis of prevalence and moderators among half a million adults in 206 studies Tyler Williamson World Psychiatry
Health care cost of severe obesity and obesity-related comorbidities: A retrospective cohort study from Alberta, Canada Tyler Williamson Obesity Research and Clinical Practice
Adoption and decision factors regarding selective treatment of clinical mastitis on Canadian dairy farms Javier Sanchez Journal of Dairy Science
Vaccine Effectiveness of non-adjuvanted and adjuvanted trivalent inactivated influenza vaccines in the prevention of influenza-related hospitalization in older adults: A pooled analysis from the Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research Network (CIRN) Mark Loeb Vaccine
COVID-19 Vaccine's Speed to Market and Vaccine Hesitancy: A Cross-Sectional Survey Study Tyler Williamson Healthcare policy = Politiques de sante
Cannabis-Involved Traffic Injury Emergency Department Visits After Cannabis Legalization and Commercialization Doug Manuel JAMA network open
Background rates of adverse events of special interest for COVID-19 vaccines: A multinational Global Vaccine Data Network (GVDN) analysis Naveed Janjua Vaccine
Development of machine learning models for the detection of surgical site infections following total hip and knee arthroplasty: a multicenter cohort study Tyler Williamson Antimicrobial Resistance and Infection Control
Medium-term scenarios of COVID-19 as a function of immune uncertainties and chronic disease Caroline Wagner Journal of the Royal Society, Interface
Global impact and cost-effectiveness of one-dose versus two-dose human papillomavirus vaccination schedules: a comparative modelling analysis Marc Brisson BMC Medicine
Is scientific evidence enough? Using expert opinion to fill gaps in data in antimicrobial resistance research Amy Greer PLoS ONE
Foodborne Botulism, Canada, 2006–2021<sup>1</sup> Natalie Prystajecky Emerging Infectious Diseases
Comparison of socio-economic determinants of COVID-19 testing and positivity in Canada: A multi-provincial analysis Sharmistha Mishra PLoS ONE
Trajectory of health care resources among adults stopping or reducing treatment frequency of botulinum toxin for chronic migraine treatment in Alberta, Canada Tyler Williamson Headache
Time-to-event outcomes and survival analysis Tyler Williamson Translational Sports Medicine
Genomic, clinical and immunity data join forces for public health Caroline Colijn Nature Reviews Microbiology
The evolution of SARS-CoV-2 seroprevalence in Canada: a time-series study, 2020-2023 David Buckeridge CMAJ. Canadian Medical Association Journal
A posteriori error analysis for a space-time parallel discretization of parabolic partial differential equations Donald Estep Numerical Methods for Partial Differential Equations
Coronavirus Disease 2019 Vaccination Is Associated With Reduced Outpatient Antibiotic Prescribing in Older Adults With Confirmed Severe Acute Respiratory Syndrome Coronavirus 2: A Population-Wide Cohort Study Doug Manuel, Sharmistha Mishra Clinical Infectious Diseases
Physician continuity of care in the last year of life in community-dwelling adults: retrospective population-based study Doug Manuel BMJ Supportive and Palliative Care
A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance Troy Day PLoS Computational Biology
Strengthening health care in Canada post-COVID-19 pandemic Christopher McCabe Facets
“I don't need any more unknowns hanging over my head”: Views of patients with cancer on variants of uncertain significance and low/moderate risk results from genomic sequencing Timothy Caulfield Genetics in Medicine
Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19 Caroline Colijn, Paul Tupper Nature communications
A proportional incidence rate model for aggregated data to study the vaccine effectiveness against COVID-19 hospital and ICU admissions Ashleigh Tuite Biometrics
Equity issues rarely addressed in the development of COVID-19 formal recommendations and good practice statements: a cross-sectional study Mark Loeb Journal of Clinical Epidemiology
The impact of expanded access to direct acting antivirals for Hepatitis C virus on patient outcomes in Canada Naveed Janjua PloS one
Compositional Modeling with Stock and Flow Diagrams Nathaniel Osgood Electronic Proceedings in Theoretical Computer Science, EPTCS
Campus node-based wastewater surveillance enables COVID-19 case localization and confirms lower SARS-CoV-2 burden relative to the surrounding community Tyler Williamson Water Research
Testing Whether Higher Contact Among the Vaccinated Can Be a Mechanism for Observed Negative Vaccine Effectiveness Sharmistha Mishra American journal of epidemiology
Mortality rates among patients successfully treated for hepatitis C in the era of interferon-free antivirals: population based cohort study Naveed Janjua BMJ (Clinical research ed.)
A systematic review of the accessibility, acceptability, safety, efficiency, clinical effectiveness, and cost-effectiveness of private cataract and orthopedic surgery clinics Jeff Round International journal of technology assessment in health care
Evaluating the Impact of Increased Dispensing of Opioid Agonist Therapy Take-Home Doses on Treatment Retention and Opioid-Related Harm among Opioid Agonist Therapy Recipients: A Simulation Study Nathaniel Osgood Systems
The Complexity of Transferring Remote Monitoring and Virtual Care Technology Between Countries: Lessons From an International Workshop Dionne Aleman Journal of Medical Internet Research
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling Caroline Colijn, Natalie Prystajecky Infection, Genetics and Evolution
Bumble bee pollination and the wildflower/crop trade-off: When do wildflower enhancements improve crop yield? Rebecca Tyson Ecological Modelling
Global prevalence, cascade of care, and prophylaxis coverage of hepatitis B in 2022: a modelling study Naveed Janjua The Lancet Gastroenterology and Hepatology
The impact of respiratory infections and probiotic use on the nasal microbiota of frail residents in long-term care homes Mark Loeb ERJ Open Research
Public reimbursement policies in Canada for direct-acting antiviral treatment of hepatitis C virus infection: A descriptive study Naveed Janjua Canadian Liver Journal
Antimicrobial and teat sealant use and selection criteria at dry-off on Canadian dairy farms Javier Sanchez Journal of Dairy Science
How Canada's decentralised covid-19 response affected public health data and decision making Sharmistha Mishra BMJ (Clinical research ed.)
Use and misuse of research: Canada's response to covid-19 and its health inequalities Sharmistha Mishra BMJ
Changes in context, typology and programme outcomes between early and recent periods of sex work among young female sex workers in Mombasa, Kenya: A cross-sectional study Sharmistha Mishra PloS one
Adolescent childbirth and mobility disability among women ages 15-49: An analysis of population health surveys from 14 low-income and middle-income countries Diego Bassani BMJ Open
Participatory Modeling with Discrete-Event Simulation: A Hybrid Approach to Inform Policy Development to Reduce Emergency Department Wait Times Nathaniel Osgood Systems
Medical Masks Versus N95 Respirators for Preventing COVID-19 Among Health Care Workers David Fisman Annals of internal medicine
Medical Masks Versus N95 Respirators for Preventing COVID-19 Among Health Care Workers Mark Loeb Annals of internal medicine
Effectiveness of previous infection-induced and vaccine-induced protection against hospitalisation due to omicron BA subvariants in older adults: a test-negative, case-control study in Quebec, Canada Marc Brisson The Lancet Healthy Longevity
A novel systematic pipeline for increased predictability and explainability of growth patterns in children using trajectory features Diego Bassani International Journal of Medical Informatics
Population-level impact of expanding PrEP coverage by offering long-acting injectable PrEP to MSM in three high-resource settings: a model comparison analysis Mathieu Maheu-Giroux Journal of the International AIDS Society
Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping and sequence analysis Jesse Shapiro iScience
Trends in HIV testing, the treatment cascade, and HIV incidence among men who have sex with men in Africa: a systematic review and meta-analysis Mathieu Maheu-Giroux The Lancet HIV
Unemployment and underemployment are causes of suicide Nathaniel Osgood Science advances
Leveraging Influenza Virus Surveillance from 2012 to 2015 to Characterize the Burden of Respiratory Syncytial Virus Disease in Canadian Adults ≥50 Years of Age Hospitalized with Acute Respiratory Illness Mark Loeb Open Forum Infectious Diseases
The role of mucosal barriers in disease progression and transmission Caroline Wagner Advanced Drug Delivery Reviews
Conceptual and empirical bridges between micro- and macroevolution Sarah Otto Nature Ecology and Evolution
Examining the effect of the COVID-19 pandemic on community virus prevalence and healthcare utilisation reveals that peaks in asthma, COPD and respiratory tract infection occur with the re-emergence of rhino/enterovirus Mark Loeb Thorax
Risk of COVID-19 hospitalization in people living with HIV and HIV-negative individuals and the role of COVID-19 vaccination: A retrospective cohort study Naveed Janjua International Journal of Infectious Diseases
The Association Between Heterosexual anal Intercourse and HIV Acquisition in Three Prospective Cohorts of Women Mathieu Maheu-Giroux AIDS and Behavior
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning Cedric Chauve Bioinformatics (Oxford, England)
Quantifying antimicrobial use on Canadian dairy farms using garbage can audits Javier Sanchez Frontiers in Veterinary Science
Comparison of pretrained transformer-based models for influenza and COVID-19 detection using social media text data in Saskatchewan, Canada Nathaniel Osgood Frontiers in Digital Health
A comparison of sampling and testing approaches for the surveillance of SARS-CoV-2 in farmed American mink Natalie Prystajecky Journal of Veterinary Diagnostic Investigation
Wastewater-based surveillance can be used to model COVID-19-associated workforce absenteeism Tyler Williamson Science of the Total Environment
Regulating cancer risk prediction: legal considerations and stakeholder perspectives on the Canadian context Michael Wolfson Human Genetics
Identifying Unique Subgroups of High-Cost Patients With Schizophrenia: A Population-Based Study Using Latent Class Analysis Tyler Williamson Health Services Insights
Temporality-induced chaos in the Kuramoto Model Sean Cornelius Northeast Journal of Complex Systems
Species distribution model identifies influence of climatic constraints on severe defoliation at the leading edge of a native insect outbreak Amy Hurford Forest Ecology and Management
Opioid-related harms and care impacts of conventional and AI-based prescription management strategies: insights from leveraging agent-based modeling and machine learning Nathaniel Osgood Frontiers in Digital Health
COVID-19: révisionnisme associé au confinement Timothy Caulfield CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
COVID-19: révisionnisme associé au confinement Timothy Caulfield CMAJ. Canadian Medical Association Journal
Rapid diagnostic testing for syphilis in Arctic communities (the STAR study): a multisite prospective field diagnostic accuracy study in an intended-use setting Mathieu Maheu-Giroux Clinical Microbiology and Infection
Adaptability of single-nucleotide polymorphism-polymerase chain reaction (SNP-PCR) for subtyping SARS-CoV-2 and a new SNP-PCR for XBB, XBB.1.5, and B.Q.1/B.Q.1.1 Natalie Prystajecky Clinical Microbiology and Infection
Real-World Evidence in Cost-Effectiveness Analysis of Enhanced Influenza Vaccines in Adults ≥ 65 Years of Age: Literature Review and Expert Opinion David Fisman Vaccines
SARS-CoV-2 cross-sectional seroprevalence study among public school staff in Metro Vancouver after the first Omicron wave in British Columbia, Canada Daniel Coombs BMJ Open
Plan Assessment Metrics for Dose Painting in Stereotactic Radiosurgery Dionne Aleman Advances in Radiation Oncology
The influence of sociodemographic factors on COVID-19 vaccine certificate acceptance: A cross-sectional study Timothy Caulfield Human Vaccines and Immunotherapeutics
Diminished Neutralization Capacity of SARS-CoV-2 Omicron BA.1 in Donor Plasma Collected from January to March 2021 Ashleigh Tuite Microbiology spectrum
An exploration of the relationship between wastewater viral signals and COVID-19 hospitalizations in Ottawa, Canada Doug Manuel Infectious Disease Modelling
Analgesic Use Among Adults with a Trauma-Related Emergency Department Visit: A Retrospective Cohort Study from Alberta, Canada Tyler Williamson Pain and Therapy
Use of latent class analysis and patient reported outcome measures to identify distinct long COVID phenotypes: A longitudinal cohort study Naveed Janjua PLoS ONE
The impact of alternate level of care on access block and operational strategies to reduce emergency wait times: a multi-center simulation study Nathaniel Osgood Canadian Journal of Emergency Medicine
Respiratory protection: what SARS-CoV-2 has taught us Mark Loeb Current Opinion in Infectious Diseases
Advertising Alternative Cancer Treatments and Approaches on Meta Social Media Platforms: Content Analysis Timothy Caulfield JMIR Infodemiology
A null model for the distribution of fitness effects of mutations Troy Day Proceedings of the National Academy of Sciences of the United States of America
Life history optimisation drives latitudinal gradients and responses to global change in marine fishes Troy Day PLoS Biology
Intramammary and systemic use of antimicrobials and their association with resistance in generic Escherichia coli recovered from fecal samples from Canadian dairy herds: A cross-sectional study Javier Sanchez Preventive Veterinary Medicine
When the role of uncertainty is…uncertain David Fisman Proceedings of the National Academy of Sciences of the United States of America
“I take it and give it to my partners who will give it to their partners”: Secondary distribution of HIV self-tests by key populations in Côte d’Ivoire, Mali, and Senegal Mathieu Maheu-Giroux BMC Infectious Diseases
Predicting the daily counts of COVID-19 infection using temporal convolutional networks Xuekui Zhang Journal of Global Health
Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2 Jonathan Dushoff Proceedings of the National Academy of Sciences of the United States of America
A queuing model for ventilator capacity management during the COVID-19 pandemic Alexander Rutherford Health Care Management Science
A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings Caroline Colijn Genome research
Correction to: Prevalence of depression, syndemic factors and their impact on viral suppression among female sex workers living with HIV in eThekwini, South Africa (BMC Women's Health, (2023), 23, 1, (232), 10.1186/s12905-023-02392-2) Sharmistha Mishra BMC Women's Health
Urban design and cardio-metabolic risk factors Tyler Williamson Preventive Medicine
The association between paramedic service system hospital offload time and response time Tyler Williamson Canadian Journal of Emergency Medicine
Braiding Indigenous rights and endangered species law Sarah Otto Science (New York, N.Y.)
Braiding Indigenous rights and endangered species law Sarah Otto Science
Wastewater monitoring can anchor global disease surveillance systems Doug Manuel The Lancet Global Health
Estimating the Under-ascertainment of COVID-19 cases in Toronto, Ontario, March to May 2020 Amy Greer Journal of Public Health Research
Understanding the impact of mobility on COVID-19 spread: A hybrid gravity-metapopulation model of COVID-19 Naveed Janjua PLoS Computational Biology
Beyond Translation: An Overview of Best Practices for Evidence-Informed Decision Making for Public Health Practice Julien Arino Studies in Big Data
Using “big data” for economic evaluations in genomics Christopher McCabe Economic Evaluation in Genomic and Precision Medicine
The Contribution of Gestational Diabetes to Diabetes Risk Among First Nations and Non–First Nations Women in Saskatchewan: Results From the DIP: ORRIIGENSS Project Nathaniel Osgood Canadian Journal of Diabetes
Prevalence of depression, syndemic factors and their impact on viral suppression among female sex workers living with HIV in eThekwini, South Africa Sharmistha Mishra BMC Women's Health
Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes Sandrine Moreira BMC Biology
Boosting propagule transport models with individual-specific data from mobile apps Mark Lewis Journal of Applied Ecology
The impact of threshold decision mechanisms of collective behavior on disease spread Troy Day Proceedings of the National Academy of Sciences of the United States of America
Next-generation matrices for marine metapopulations: The case of sea lice on salmon farms Mark Lewis Ecology and Evolution
The impact of unexpected intensive care unit admission after cancer surgery on long-term symptom burden among older adults: a population-based longitudinal analysis Doug Manuel Critical Care
Antimicrobial use and its association with the isolation of and antimicrobial resistance in Campylobacter spp. recovered from fecal samples from Canadian dairy herds: A cross-sectional study Javier Sanchez Preventive Veterinary Medicine
The Brief Case: an Infectious Hazard of Hunting Natalie Prystajecky Journal of clinical microbiology
Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities Jonathan Dushoff PNAS Nexus
Association of COVID-19 Infection With Incident Diabetes Naveed Janjua JAMA network open
A population-based study of reported hepatitis C diagnoses from 1998 to 2018 in immigrants and nonimmigrants in Quebec, Canada Naveed Janjua Journal of Viral Hepatitis
COVID-19 lockdown revisionism Timothy Caulfield CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Hepatitis B and C in individuals with a history of antipsychotic medication use: A population-based evaluation David Fisman PLoS ONE
Diversities and the Generalized Circumradius Paul Tupper Discrete and Computational Geometry
Single nucleotide variants in Pseudomonas aeruginosa populations from sputum correlate with baseline lung function and predict disease progression in individuals with cystic fibrosis Jesse Shapiro Microbial genomics
People With Human Immunodeficiency Virus Receiving Suppressive Antiretroviral Therapy Show Typical Antibody Durability After Dual Coronavirus Disease 2019 Vaccination and Strong Third Dose Responses Natalie Prystajecky Journal of Infectious Diseases
Public health interventions, priority populations, and the impact of COVID-19 disruptions on hepatitis C elimination among people who have injected drugs in Montreal (Canada): A modeling study Mathieu Maheu-Giroux International Journal of Drug Policy
Hepatitis D double reflex testing of all hepatitis B carriers in low-HBV- and high-HBV/HDV-prevalence countries Naveed Janjua Journal of Hepatology
Stochastic resonance in climate reddening increases the risk of cyclic ecosystem extinction via phase-tipping Rebecca Tyson Global Change Biology
Extended biasplot command to assess bias, precision, and agreement in method comparison studies Tyler Williamson Stata Journal
Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis Jesse Shapiro eLife
COVID-19 Vaccine Effectiveness Against Omicron Infection and Hospitalization Naveed Janjua Pediatrics
Supplement feed efficiency of growing beef cattle grazing native Campos grasslands during winter: A collated analysis Javier Sanchez Translational Animal Science
Vaccine effectiveness against hospitalization among adolescent and pediatric SARS-CoV-2 cases between May 2021 and January 2022 in Ontario, Canada: A retrospective cohort study David Fisman, Ashleigh Tuite PLoS ONE
Reducing touching eyes, nose and mouth (‘T-zone’) to reduce the spread of infectious disease: A prospective study of motivational, volitional and non-reflective predictors Doug Manuel British Journal of Health Psychology
Resource and seasonality drive interspecific variability in simulations from a dynamic energy budget model Amy Hurford Conservation Physiology
Application of Group Sequential Methods to the 2-in-1 Design and Its Extensions for Interim Monitoring Xuekui Zhang Statistics in Biopharmaceutical Research
Great expectations: patients’ preferences for clinically significant results from genomic sequencing Timothy Caulfield Human Genetics
Observed negative vaccine effectiveness could be the canary in the coal mine for biases in observational COVID-19 studies Sharmistha Mishra International Journal of Infectious Diseases
The maximum entropy principle to predict forager spatial distributions: an alternate perspective for movement ecology Rebecca Tyson Theoretical Ecology
A population-based assessment of myocarditis after messenger RNA COVID-19 booster vaccination among adult recipients Naveed Janjua International Journal of Infectious Diseases
The association of gestational age at birth with trajectories of early childhood developmental delay among late preterm and early term born children: A longitudinal analysis of All Our Families pregnancy cohort Tyler Williamson Paediatric and Perinatal Epidemiology
GloveCare: a pilot study in preparation for a cluster crossover randomized controlled trial of non-sterile glove-based care in preventing late-onset infection in the NICU Mark Loeb Pilot and Feasibility Studies
Differential Patterns by Area-Level Social Determinants of Health in Coronavirus Disease 2019 (COVID-19)–Related Mortality and Non–COVID-19 Mortality: A Population-Based Study of 11.8 Million People in Ontario, Canada Sharmistha Mishra Clinical Infectious Diseases
Trajectory of maternal depression and parasomnias Diego Bassani Journal of Sleep Research
Using a hybrid simulation model to assess the impacts of combined COVID-19 containment measures in a high-speed train station Nathaniel Osgood Journal of Simulation
scAnnotate: an automated cell-type annotation tool for single-cell RNA-sequencing data Xuekui Zhang Bioinformatics Advances
Psychology Meets Biology in COVID-19: What We Know and Why It Matters for Public Health Amy Greer Policy Insights from the Behavioral and Brain Sciences
Development of a ParticipACTION App–Based Intervention for Improving Postsecondary Students’ 24-Hour Movement Guideline Behaviors: Protocol for the Application of Intervention Mapping Shelby Sturrock JMIR Research Protocols
Incidence of SARS-CoV-2 Infection Among People Experiencing Homelessness in Toronto, Canada Sharmistha Mishra JAMA network open
Cost Analysis of a Transition Care Bundle Compared with Usual Care for COPD Patients Being Discharged from Hospital: Evaluation of a Randomized Controlled Trial Jeff Round PharmacoEconomics - Open
Impact of Age and Severe Acute Respiratory Syndrome Coronavirus 2 Breakthrough Infection on Humoral Immune Responses after Three Doses of Coronavirus Disease 2019 mRNA Vaccine Natalie Prystajecky Open Forum Infectious Diseases
Opposing effects of plant traits on diversification Sarah Otto iScience
Mortality and Life Expectancy Lost in Canada Attributable to Dietary Patterns: Evidence From Canadian National Nutrition Survey Linked to Routinely Collected Health Administrative Databases Doug Manuel American journal of epidemiology
No life-history cost of tebufenozide resistance in the smaller tea tortrix moth Troy Day Pest Management Science
Epidemiological cluster identification using multiple data sources: an approach using logistic regression Caroline Colijn, Paul Tupper Microbial Genomics
Realizing the value in “non-standard” parts of the qPCR standard curve by integrating fundamentals of quantitative microbiology Natalie Prystajecky Frontiers in Microbiology
The Cascade of Care for Hepatitis C Treatment in Rwanda: A Retrospective Cohort Study of the 2017–2019 Mass Screening and Treatment Campaign Naveed Janjua Viruses
Impacts of observation frequency on proximity contact data and modeled transmission dynamics Nathaniel Osgood PLoS computational biology
Trait-dependent diversification in angiosperms: Patterns, models and data Sarah Otto Ecology Letters
Comparing direct-to-consumer genetic testing services in English, Japanese, and Chinese websites Timothy Caulfield Anthropological Science
Mpox in people with advanced HIV infection: a global case series Sharmistha Mishra The Lancet
Older persons living with dementia and their use of acute care services over 2 years in Alberta Tyler Williamson Canadian Family Physician
Dynamics of fecal coliform bacteria along Canada's coast Xuekui Zhang Marine Pollution Bulletin
Effectiveness of Coronavirus Disease 2019 Vaccines Against Hospitalization and Death in Canada: A Multiprovincial, Test-Negative Design Study Naveed Janjua Clinical Infectious Diseases
A Genome-Wide Association Study of Dementia Using the Electronic Medical Record Xuekui Zhang BioMedInformatics
Global evidence of gender equity in academic health research: a scoping review Christopher McCabe BMJ open
Comparison of three dosing intervals for the primary vaccination of the SARS-CoV-2 mRNA Vaccine (BNT162b2) on magnitude, neutralization capacity and durability of the humoral immune response in health care workers: A prospective cohort study Mark Loeb PLoS ONE
Sex-specific relationships between obesity, physical activity, and gray and white matter volume in cognitively unimpaired older adults Jean-Paul Soucy GeroScience
Temporary treatment cessation versus continuation of first-line tyrosine kinase inhibitor in patients with advanced clear cell renal cell carcinoma (STAR): an open-label, non-inferiority, randomised, controlled, phase 2/3 trial Christopher McCabe The Lancet Oncology
The role of fire in terrestrial vertebrate richness patterns Benjamin Bolker Ecology Letters
Descriptive network analysis and the influence of timescale on centrality and cohesion metrics from a system of between-herd dairy cow movements in Ontario, Canada Amy Greer Preventive Veterinary Medicine
Evaluation of the effectiveness of maternal immunization against pertussis in Alberta using agent-based modeling: A Canadian immunization research network study David Fisman, Nathaniel Osgood Vaccine
An introduction to machine learning for classification and prediction Tyler Williamson Family practice
Author Reply Christopher McCabe Value in Health
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome Jesse Shapiro eLife
Relative Virulence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Among Vaccinated and Unvaccinated Individuals Hospitalized With SARS-CoV-2 David Fisman, Ashleigh Tuite Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Severity of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection in Pregnancy in Ontario: A Matched Cohort Analysis David Fisman, Ashleigh Tuite Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Clinical Severity of Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant Relative to Delta in British Columbia, Canada: A Retrospective Analysis of Whole-Genome Sequenced Cases Naveed Janjua, Sharmistha Mishra, Natalie Prystajecky Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Timing and probability of arrival for sea lice dispersing between salmon farms Mark Lewis Royal Society Open Science
Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness data Caroline Colijn Biometrics
Environmental Surface Contamination with Monkeypox Virus in the Ambulatory Setting in Toronto, Canada Sharmistha Mishra Open Forum Infectious Diseases
Error estimation for the time to a threshold value in evolutionary partial differential equations Donald Estep BIT Numerical Mathematics
Comparison of influenza and COVID-19 hospitalisations in British Columbia, Canada: a population-based study Naveed Janjua BMJ open respiratory research
Comparison of Physicochemical Properties of Native Mucus and Reconstituted Mucin Gels Caroline Wagner Biomacromolecules
Prevalence and risk factors for human papillomavirus infection among female sex workers in Hanoi and Ho Chi Minh City, Viet Nam: a cross-sectional study Marc Brisson Western Pacific surveillance and response journal : WPSAR
HIV acquisition prior to entry into formal sex work: inference from next-generation viral sequencing Sharmistha Mishra AIDS (London, England)
To seal or not to seal following an antimicrobial infusion at dry-off? A systematic review and multivariate meta-analysis of the incidence and prevalence of intramammary infections post-calving in dairy cows Javier Sanchez Preventive Veterinary Medicine
An Agent-Based Social Impact Theory Model to Study the Impact of In-Person School Closures on Nonmedical Prescription Opioid Use among Youth Nathaniel Osgood Systems
A novel shape-based approach to identify gestational age-adjusted growth patterns from birth to 11 years of age Diego Bassani Scientific Reports
A model for the early COVID-19 outbreak in China with case detection and behavioural change Julien Arino Biomath
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing Cedric Chauve Nucleic acids research
Wearable Device Validity in Measuring Steps, Energy Expenditure, and Heart Rate Across Age, Gender, and Body Mass Index: Data Analysis From a Systematic Review Shelby Sturrock Journal of Physical Activity and Health
Comparison of Preprint Postings of Randomized Clinical Trials on COVID-19 and Corresponding Published Journal Articles: A Systematic Review Mark Loeb JAMA Network Open
Comparing machine learning approaches to incorporate time-varying covariates in predicting cancer survival time Benjamin Bolker, Jonathan Dushoff Scientific Reports
Amyloid-PET of the white matter: Relationship to free water, fiber integrity, and cognition in patients with dementia and small vessel disease Jean-Paul Soucy Journal of Cerebral Blood Flow and Metabolism
Estimating the test-adjusted incidence of Chlamydia trachomatis infections identified through Public Health Ontario Laboratories in Peel region, Ontario, 2010-2018: a population-based study David Fisman, Amy Greer, Ashleigh Tuite CMAJ open
Generating simple classification rules to predict local surges in COVID-19 hospitalizations Ashleigh Tuite Health Care Management Science
The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information Natalie Prystajecky Microbial genomics
Simulation Model of a Multi-Hospital Critical Care Network Alexander Rutherford Proceedings - Winter Simulation Conference
A Health Survey-Based Prediction Equation for Incident CKD Doug Manuel Clinical journal of the American Society of Nephrology : CJASN
Protective effectiveness of previous SARS-CoV-2 infection and hybrid immunity against the omicron variant and severe disease: a systematic review and meta-regression David Buckeridge The Lancet Infectious Diseases
Association between physician continuity of care and patient outcomes in clinical teaching units: a cohort analysis Tyler Williamson CMAJ open
Novel modelling strategies for high-frequency stock trading data Xuekui Zhang Financial Innovation
Regional and country-level trends in cervical cancer screening coverage in sub-Saharan Africa: A systematic analysis of population-based surveys (2000-2020) Marc Brisson, Mathieu Maheu-Giroux PLoS medicine
The Impact of Mask Mandates on Face Mask Use During the COVID-19 Pandemic: Longitudinal Survey Study Naveed Janjua JMIR public health and surveillance
Health Literacy and Serious or Persistent Mental Illness: A Mixed Methods Study Nathaniel Osgood Health literacy research and practice
Hands off the Mink! Using Environmental Sampling for SARS-CoV-2 Surveillance in American Mink Natalie Prystajecky International Journal of Environmental Research and Public Health
How time-scale differences in asymptomatic and symptomatic transmission shape SARS-CoV-2 outbreak dynamics Jonathan Dushoff Epidemics
Cross-Canada Variability in Blood Donor SARS-CoV-2 Seroprevalence by Social Determinants of Health Naveed Janjua Microbiology Spectrum
Variation in Testing for and Incidence of Celiac Autoimmunity in Canada: A Population-Based Study Tyler Williamson Gastroenterology
When host populations move north, but disease moves south: Counter-intuitive impacts of climate change on disease spread Amy Hurford Theoretical Ecology
Melanin levels in relation to vitamin D among first-generation immigrants from different ethnic groups and origins: A comparative national Canadian cross-sectional study Doug Manuel Frontiers in Medicine
Environmental Testing of Surfaces in the Room of a Patient With Mpox Sharmistha Mishra Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Efficient computation of contributional diversity metrics from microbiome data with FuncDiv Jesse Shapiro Bioinformatics (Oxford, England)
Spatio-Temporal Clustering of Multi-Location Time Series to Model Seasonal Influenza Spread Dionne Aleman IEEE Journal of Biomedical and Health Informatics
Evaluating undercounts in epidemics: Response to Maruotti et al. (2022) Benjamin Bolker, Jonathan Dushoff, David Earn Journal of Medical Virology
Foreword Timothy Caulfield Investigating Clinical Psychology: Pseudoscience, Fringe Science, and Controversies
Safety Profile of Linezolid in Older Adults With Renal Impairment: A Population-Based Retrospective Cohort Study Mark Loeb Open Forum Infectious Diseases
Population-Level Trends in Emergency Department Encounters for Sexual Assault Preceding and During the COVID-19 Pandemic Across Ontario, Canada Doug Manuel JAMA network open
Newspaper Coverage of COVID-19 Vaccination Requirement for Organ Transplant Timothy Caulfield JAMA network open
Pandemic modelling for regions implementing an elimination strategy Julien Arino, Amy Hurford Journal of Theoretical Biology
The availability and distribution of vaping retailers across Ontario neighbourhoods, 2016–2019 Shelby Sturrock Canadian Journal of Public Health
Construction and validation of the Oxford Neurodevelopment Assessment (OX-NDA) in 1-year-old Brazilian children Diego Bassani BMC Pediatrics
An Elastic Net Regression Model for Identifying Long COVID Patients Using Health Administrative Data: A Population-Based Study Naveed Janjua, Sharmistha Mishra Open Forum Infectious Diseases
Clinical severity of Omicron subvariants BA.1, BA.2, and BA.5 in a population-based cohort study in British Columbia, Canada Naveed Janjua, Sharmistha Mishra, Natalie Prystajecky Journal of Medical Virology
Antibody response durability following three-dose coronavirus disease 2019 vaccination in people with HIV receiving suppressive antiretroviral therapy Natalie Prystajecky AIDS
[<sup>18</sup>F]TRACK, a PET tracer for imaging of tropomyosin receptor kinases (Trk): efficient radiosynthesis and preliminary evaluation in the TgF344-AD rat model of Alzheimer’s disease. Jean-Paul Soucy Alzheimer's and Dementia
Tau phosphorylation is more closely associated with amyloid-β plaques than with tau neurofibrillary tangles Jean-Paul Soucy Alzheimer's and Dementia
Association of Linezolid With Risk of Serotonin Syndrome in Patients Receiving Antidepressants Mark Loeb JAMA network open
Privacy Considerations in the Canadian Regulation of Commercially-Operated Healthcare Artificial Intelligence Timothy Caulfield Canadian Journal of Bioethics
Potential benefit of extended dose schedules of human papillomavirus vaccination in the context of scarce resources and COVID-19 disruptions in low-income and middle-income countries: a mathematical modelling analysis Marc Brisson The Lancet Global Health
Human monkeypox: a comparison of the characteristics of the new epidemic to the endemic disease Sharmistha Mishra BMC Infectious Diseases
Association of Phosphorylated Tau Biomarkers With Amyloid Positron Emission Tomography vs Tau Positron Emission Tomography Jean-Paul Soucy JAMA neurology
Risk factors for COVID-19 hospitalization after COVID-19 vaccination: a population-based cohort study in Canada Naveed Janjua International Journal of Infectious Diseases
Rapid weed adaptation and range expansion in response to agriculture over the past two centuries Sarah Otto Science
Observed versus expected rates of myocarditis after SARS-CoV-2 vaccination: a population-based cohort study Naveed Janjua CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
HIV- and sex work-related stigmas and quality of life of female sex workers living with HIV in South Africa: a cross-sectional study Sharmistha Mishra BMC Infectious Diseases
Maximizing the impact of limited vaccine supply under different early epidemic conditions: a 2-city modelling analysis of monkeypox virus transmission among men who have sex with men Sharmistha Mishra CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Evaluation of Real-life Use of Point-of-care Rapid Antigen Testing for SARS-CoV-2 in Schools (EPOCRATES): a cohort study David Buckeridge CMAJ open
Using spatial and population mobility models to inform outbreak response approaches in the Ebola affected area, Democratic Republic of the Congo, 2018-2020 Ashleigh Tuite Spatial and Spatio-temporal Epidemiology
Genome-wide association studies reveal distinct genetic correlates and increased heritability of antimicrobial resistance in Vibrio cholerae under anaerobic conditions Jesse Shapiro Microbial Genomics
High-throughput sequencing defines donor and recipient HLA B-cell epitope frequencies for prospective matching in transplantation Timothy Caulfield Communications Biology
The effects of intimate partner violence on women's risk of HIV acquisition and engagement in the HIV treatment and care cascade: a pooled analysis of nationally representative surveys in sub-Saharan Africa Mathieu Maheu-Giroux The Lancet HIV
Prognostic factors for streptococcal toxic shock syndrome: Systematic review and meta-analysis Mark Loeb BMJ Open
Effectiveness of COVID-19 vaccines in people living with HIV in British Columbia and comparisons with a matched HIV-negative cohort: a test-negative design Naveed Janjua International Journal of Infectious Diseases
Two-Dose Severe Acute Respiratory Syndrome Coronavirus 2 Vaccine Effectiveness With Mixed Schedules and Extended Dosing Intervals: Test-Negative Design Studies From British Columbia and Quebec, Canada Marc Brisson, Natalie Prystajecky Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Fragmentation of outage clusters during the recovery of power distribution grids Sean Cornelius Nature Communications
Au Canada, la nouvelle normalité nécessitera un système de détection amélioré des pathogènes respiratoires émergents et réémergents Sharmistha Mishra CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Medical Masks Versus N95 Respirators for Preventing COVID-19 Among Health Care Workers A Randomized Trial Mark Loeb Annals of Internal Medicine
Effect of the incremental protection of previous infection against Omicron infection among individuals with a hybrid of infection- and vaccine-induced immunity: a population-based cohort study in Canada Sharmistha Mishra International Journal of Infectious Diseases
Modeling vaccination and control strategies for outbreaks of monkeypox at gatherings Julien Arino Frontiers in Public Health
Applied artificial intelligence in healthcare: Listening to the winds of change in a post-COVID-19 world David Buckeridge Experimental Biology and Medicine
Investigating effective testing strategies for the control of Johne's disease in western Canadian cow-calf herds using an agent-based simulation model Nathaniel Osgood Frontiers in Veterinary Science
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low- and high-vaccinated populations Caroline Colijn, Paul Tupper Journal of Theoretical Biology
Caring for older men and women: whose caregivers are more distressed? A population-based retrospective cohort study Doug Manuel BMC Geriatrics
Integrating machine learning and digital microfluidics for screening experimental conditions Jean-Paul Soucy Lab on a Chip
Performance of machine learning algorithms for surgical site infection case detection and prediction: A systematic review and meta-analysis Tyler Williamson Annals of Medicine and Surgery
Impact of Hepatitis B Virus Infection, Non-alcoholic Fatty Liver Disease, and Hepatitis C Virus Co-infection on Liver-Related Death among People Tested for Hepatitis B Virus in British Columbia: Results from a Large Longitudinal Population-Based Cohort Study Naveed Janjua Viruses
Assessing the potential for virtualizable care in the pediatric emergency department David Buckeridge Journal of Telemedicine and Telecare
Estimating the effect of HIV on cervical cancer elimination in South Africa: Comparative modelling of the impact of vaccination and screening Marc Brisson eClinicalMedicine
Novel care pathway to optimise antimicrobial prescribing for uncomplicated community-acquired pneumonia: study protocol for a prospective before-after cohort study in the emergency department of a tertiary care Canadian children's hospital Mark Loeb BMJ Open
Assessment of the quality and content of clinical practice guidelines (CPGs) for vitamin D and for immigrants using the AGREE-II instrument: a protocol for systematic review Doug Manuel Systematic Reviews
SARS-CoV-2 in Nursing Homes: Analysis of Routine Surveillance Data in Four European Countries Julien Arino Aging and Disease
Influenza vaccine to reduce adverse vascular events in patients with heart failure: a multinational randomised, double-blind, placebo-controlled trial Mark Loeb The Lancet Global Health
The phoenix hypothesis of speciation Sarah Otto Proceedings of the Royal Society B: Biological Sciences
Cytomegalovirus Seropositivity in Older Adults Changes the T Cell Repertoire but Does Not Prevent Antibody or Cellular Responses to SARS-CoV-2 Vaccination Mark Loeb Journal of Immunology
Corrigendum to “Estimating effective reproduction number using generation time versus serial interval, with application to covid-19 in the Greater Toronto Area, Canada” [Infectious Disease Modelling 5 (2020) 889–896, (S2468042720300634), (10.1016/j.idm.2020.10.009)] Sharmistha Mishra Infectious Disease Modelling
Distributed medium viscosity yields quasi-exponential step-size probability distributions in heterogeneous media Caroline Wagner Soft Matter
Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix Caroline Colijn Journal of computational biology : a journal of computational molecular cell biology
Global SARS-CoV-2 seroprevalence from January 2020 to April 2022: A systematic review and meta-analysis of standardized population-based studies David Buckeridge PLoS medicine
Importance of occupation for SARS-CoV-2 seroprevalence and COVID-19 vaccination among correctional workers in Quebec, Canada: A cross-sectional study Mathieu Maheu-Giroux Frontiers in Public Health
Continuity of physician care over the last year of life for different cause-of-death categories: a retrospective population-based study Doug Manuel CMAJ open
Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats Natalie Prystajecky eLife
Text Message Reminders to Improve Immunization Appointment Attendance in Alberta, Canada: The Childhood Immunization Reminder Project Pilot Study Larry Svenson JMIR mHealth and uHealth
Comparative Risk of Myocarditis/Pericarditis Following Second Doses of BNT162b2 and mRNA-1273 Coronavirus Vaccines Naveed Janjua Journal of the American College of Cardiology
Characterizing Longitudinal Antibody Responses in Recovered Individuals Following COVID-19 Infection and Single-Dose Vaccination: A Prospective Cohort Study Natalie Prystajecky Viruses
Impact of Stagnation on the Diversity of Cyanobacteria in Drinking Water Treatment Plant Sludge Jesse Shapiro Toxins
Association between influenza vaccination and risk of stroke in Alberta, Canada: a population-based study Larry Svenson The Lancet. Public health
Timing of elimination of hepatitis C virus in Canada’s provinces Naveed Janjua Canadian Liver Journal
Using Real-World Data to Determine Health System Costs of Ontario Women Screened for Breast Cancer Michael Wolfson Current oncology (Toronto, Ont.)
Global Variations in Event-Based Surveillance for Disease Outbreak Detection: Time Series Analysis David Buckeridge JMIR public health and surveillance
Characteristics of Family Physicians Delivering Home Visits: A Canadian Retrospective Cohort Study Doug Manuel Journal of Pain and Symptom Management
The WHO AWaRe Antibiotic Book: providing guidance on optimal use and informing policy Mark Loeb The Lancet Infectious Diseases
Irregular population cycles driven by environmental stochasticity and saddle crawlbys David Earn Oikos
Describing settings of care in the last 100 days of life for cancer decedents: a population-based descriptive study Doug Manuel Cancer Medicine
Modeling electronic health record data using an end-to-end knowledge-graph-informed topic model David Buckeridge Scientific Reports
The best of both worlds: Combining population genetic and quantitative genetic models Sarah Otto Theoretical Population Biology
Optimal Planning of Health Services through Genetic Algorithm and Discrete Event Simulation: A Proposed Model and Its Application to Stroke Rehabilitation Care Jeff Round MDM Policy and Practice
COVID-19 cluster size and transmission rates in schools from crowdsourced case reports Caroline Colijn, Paul Tupper eLife
Timeliness of reporting of SARS-CoV-2 seroprevalence results and their utility for infectious disease surveillance David Buckeridge Epidemics
The potential of genomics for infectious disease forecasting Caroline Colijn Nature Microbiology
Detecting minimum energy states and multi-stability in nonlocal advection–diffusion models for interacting species Mark Lewis Journal of Mathematical Biology
Rituximab Toxicity after Preemptive or Therapeutic Administration for Post-Transplant Lymphoproliferative Disorder Tyler Williamson Transplantation and Cellular Therapy
Discordance and Concordance between Cerebrospinal and [<sup>18</sup>F]FDG-PET Biomarkers in Assessing Atypical and Early-Onset AD Dementia Cases Jean-Paul Soucy Neurology
Using Data from a Short Video Social Media Platform to Identify Emergent Monkeypox Conspiracy Theories Timothy Caulfield JAMA Network Open
Cov2clusters: genomic clustering of SARS-CoV-2 sequences Caroline Colijn, Natalie Prystajecky BMC Genomics
Coronavirus disease 2019 vaccine effectiveness among a population-based cohort of people living with HIV Naveed Janjua AIDS
Estimated Protection of Prior SARS-CoV-2 Infection Against Reinfection with the Omicron Variant among Messenger RNA-Vaccinated and Nonvaccinated Individuals in Quebec, Canada Marc Brisson JAMA Network Open
Synthetic data as an enabler for machine learning applications in medicine David Buckeridge iScience
Analyzing Phylogenetic Trees with a Tree Lattice Coordinate System and a Graph Polynomial Caroline Colijn Systematic biology
Chronic hepatitis C infection is associated with higher incidence of extrahepatic cancers in a Canadian population based cohort Naveed Janjua Frontiers in Oncology
Donation and transplantation coverage in the Canadian media: a content analysis of story focus over 2 decades Timothy Caulfield Canadian journal of surgery. Journal canadien de chirurgie
How Generalizable Are Randomized Controlled Trials (RCTs) in Staphylococcus aureus Bacteremia? A Description of the Mortality Gap Between RCTs and Observational Studies Mark Loeb Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Shotgun Metagenomic Sequencing to Assess Cyanobacterial Community Composition following Coagulation of Cyanobacterial Blooms Jesse Shapiro Toxins
Colchicine and aspirin in community patients with COVID-19 (ACT): an open-label, factorial, randomised, controlled trial Mark Loeb The Lancet Respiratory Medicine
Colchicine and the combination of rivaroxaban and aspirin in patients hospitalised with COVID-19 (ACT): an open-label, factorial, randomised, controlled trial Mark Loeb The Lancet Respiratory Medicine
Factors associated with high health care spending among patients with schizophrenia Tyler Williamson Health Promotion and Chronic Disease Prevention in Canada
Association between close interpersonal contact and vaccine hesitancy: Findings from a population-based survey in Canada Naveed Janjua Frontiers in public health
COVID-19 Cases Among Congregate Care Facility Staff by Neighborhood of Residence and Social and Structural Determinants: Observational Study Sharmistha Mishra JMIR public health and surveillance
Human monkeypox: cutaneous lesions in 8 patients in Canada Sharmistha Mishra CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
An urgent call to include men who have sex with men in the HPV immunisation programme in Kenya Sharmistha Mishra BMJ Global Health
Associations of calf management practices with antimicrobial use in Canadian dairy calves Javier Sanchez Journal of Dairy Science
Modeling the potential impact of pre-exposure prophylaxis for HIV among men who have sex with men in Cameroon Sharmistha Mishra BMC infectious diseases
Esophageal Monkeypox lesion Sharmistha Mishra Clinical Gastroenterology and Hepatology
Effect of Movement on the Early Phase of an Epidemic Julien Arino Bulletin of Mathematical Biology
Pathogen evolution during vaccination campaigns Troy Day PLoS biology
Deep learning methods may not outperform other machine learning methods on analyzing genomic studies Xuekui Zhang Frontiers in Genetics
Older Adults Mount Less Durable Humoral Responses to Two Doses of COVID-19 mRNA Vaccine but Strong Initial Responses to a Third Dose Natalie Prystajecky The Journal of infectious diseases
Protection against omicron (B.1.1.529) BA.2 reinfection conferred by primary omicron BA.1 or pre-omicron SARS-CoV-2 infection among health-care workers with and without mRNA vaccination: a test-negative case-control study Marc Brisson The Lancet Infectious Diseases
Utilization of the Abbott SARS-CoV-2 IgG II Quant Assay To Identify High-Titer Anti-SARS-CoV-2 Neutralizing Plasma against Wild-Type and Variant SARS-CoV-2 Viruses Ashleigh Tuite Microbiology spectrum
Pandemic fatigue or enduring precautionary behaviours? Canadians’ long-term response to COVID-19 public health measures David Fisman, Amy Greer, Ashleigh Tuite Preventive Medicine Reports
A better normal in Canada will need a better detection system for emerging and re-emerging respiratory pathogens Sharmistha Mishra CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Opportunities and considerations for the design of decentralized delivery of antiretroviral therapy for female sex workers living with HIV in South Africa Sharmistha Mishra BMC Health Services Research
BioCaster in 2021: automatic disease outbreaks detection from global news media David Buckeridge Bioinformatics (Oxford, England)
Adjuvant-attenuated symptom severity of influenza infections in vaccinated children Mark Loeb Infectious Medicine
Linkage of the nationally representative Canadian Community Health Survey – Nutrition 2004 to routinely collected mortality records Doug Manuel Health Reports
The monkeypox virus Sharmistha Mishra CMAJ. Canadian Medical Association Journal
Assessing transmission risks and control strategy for monkeypox as an emerging zoonosis in a metropolitan area Julien Arino Journal of Medical Virology
Stopping syphilis transmission in Arctic communities through rapid diagnostic testing: The STAR study protocol Mathieu Maheu-Giroux PLoS ONE
A Bayesian adaptive design for clinical trials of rare efficacy outcomes with multiple definitions Diego Bassani Clinical Trials
The complexity of examining laboratorybased biological markers associated with mortality in hospitalized patients during early phase of the COVID-19 pandemic: A systematic review and evidence map Mark Loeb PLoS ONE
Patient-Reported Symptom Burden After Cancer Surgery in Older Adults: A Population-Level Analysis Doug Manuel Annals of Surgical Oncology
Estimated costs and quality-adjusted life-years lost due to N. gonorrhoeae infections acquired in 2015 in the United States: A modelling study of overall burden and disparities by age, race/ethnicity, and other factors Ashleigh Tuite Lancet Regional Health - Americas
Serial infection with SARS-CoV-2 Omicron BA.1 and BA.2 following three-dose COVID-19 vaccination Natalie Prystajecky Frontiers in Immunology
Measuring progress towards reaching zero new HIV acquisitions among key populations in Québec (Canada) using routine surveillance data: a mathematical modelling study Mathieu Maheu-Giroux, Sharmistha Mishra Journal of the International AIDS Society
Estimating social contacts in mass gatherings for disease outbreak prevention and management: case of Hajj pilgrimage Julien Arino Tropical Diseases, Travel Medicine and Vaccines
MixEHR-Guided: A guided multi-modal topic modeling approach for large-scale automatic phenotyping using the electronic health record David Buckeridge Journal of Biomedical Informatics
Competing health risks associated with the COVID-19 pandemic and early response: A scoping review Sharmistha Mishra PLoS ONE
Comparative Single-Dose mRNA and ChAdOx1 Vaccine Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2, Including Variants of Concern: Test-Negative Design, British Columbia, Canada Natalie Prystajecky The Journal of infectious diseases
Handling Sparse Longitudinal Data with Irregular Missing Data-Analysis of Fecal Coliform Bacteria Data Xuekui Zhang 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2022
Ku-gaa-gii pimitizi-win, the COVID-19 cohort study of people experiencing homelessness in Toronto, Canada: a study protocol Sharmistha Mishra, Sharmistha Mishra BMJ Open
Single-Dose Messenger RNA Vaccine Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 in Healthcare Workers Extending 16 Weeks Postvaccination: A Test-Negative Design From Québec, Canada Marc Brisson Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Age-Specific Changes in Virulence Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants of Concern David Fisman, Ashleigh Tuite Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Seroprevalence and Risk Factors for Severe Acute Respiratory Syndrome Coronavirus 2 Among Incarcerated Adult Men in Quebec, Canada, 2021 Mathieu Maheu-Giroux Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
How Can Progress Toward Ending the Human Immunodeficiency Virus Epidemic in the United States Be Monitored? Mathieu Maheu-Giroux Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Case Study of Collaborative Modeling in an Indigenous Community Nathaniel Osgood Water (Switzerland)
Development and validation of a cardiovascular disease risk-prediction model using population health surveys and dietary indices: the Cardiovascular Disease Population Risk Tool - Nutrition (CVDPoRT-Nutrition) Doug Manuel International Journal of Population Data Science
Cohort profile: the British Columbia COVID-19 Population Mixing Patterns Survey (BC-Mix) Naveed Janjua BMJ Open
SARS-CoV-2 infection in Africa: A systematic review and meta-analysis of standardised seroprevalence studies, from January 2020 to December 2021 David Buckeridge BMJ Global Health
Advanced biological age is associated with improved antibody responses in older high-dose influenza vaccine recipients over four consecutive seasons Mark Loeb Immunity and Ageing
Deep clustering of bacterial tree images Caroline Colijn Philosophical Transactions of the Royal Society B: Biological Sciences
What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic? David Fisman Indoor Air
The WHO essential medicines list AWaRe book: from a list to a quality improvement system Mark Loeb Clinical Microbiology and Infection
Tracking Emergence and Spread of SARS-CoV-2 Omicron Variant in Large and Small Communities by Wastewater Monitoring in Alberta, Canada Larry Svenson Emerging Infectious Diseases
Using simulation modelling and systems science to help contain COVID-19: A systematic review Nathaniel Osgood Systems Research and Behavioral Science
Incorporating nonlinearity with generalized functional responses to simulate multiple predator effects Benjamin Bolker PeerJ
ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa Natalie Prystajecky BMC Genomics
Human papillomavirus vaccine effectiveness by number of doses: Updated systematic review of data from national immunization programs Marc Brisson Vaccine
Automatic Phenotyping by a Seed-guided Topic Model David Buckeridge Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity Jesse Shapiro Genome Biology and Evolution
Estimating the lagged effect of price discounting: a time-series study on sugar sweetened beverage purchasing in a supermarket David Buckeridge BMC Public Health
Recent economic evaluation of 1-dose HPV vaccination uses unsupported assumptions Marc Brisson Vaccine
Trends in all-cause mortality and inpatient and outpatient visits for ambulatory care sensitive conditions during the first year of the COVID-19 pandemic: A population-based study Doug Manuel Journal of Hospital Medicine
Estimation of SARS-CoV-2 antibody prevalence through serological uncertainty and daily incidence Caroline Colijn Canadian Journal of Statistics
Structural sensitivity in the functional responses of predator–prey models Rebecca Tyson Ecological Complexity
Immunogenicity, safety, and efficacy of the HPV vaccines among people living with HIV: A systematic review and meta-analysis Marc Brisson, Mathieu Maheu-Giroux eClinicalMedicine
Smoking and e-cigarette use: key variables in testing IgA-oriented intranasal vaccines Mark Loeb The Lancet Respiratory Medicine
The unmitigated profile of COVID-19 infectiousness Jonathan Dushoff eLife
The United States COVID-19 Forecast Hub dataset Dean Karlen Scientific Data
Evaluation of the PREDIGT score’s performance in identifying newly diagnosed Parkinson’s patients without motor examination Doug Manuel npj Parkinson's Disease
Modestly protective cytomegalovirus vaccination of young children effectively prevents congenital infection at the population level Daniel Coombs Vaccine
Individualized Prospective Prediction of Opioid Use Disorder Larry Svenson Canadian Journal of Psychiatry
Population-based sequencing of Mycobacterium tuberculosis reveals how current population dynamics are shaped by past epidemics Caroline Colijn eLife
Population-based sequencing of Mycobacterium tuberculosis reveals how current population dynamics are shaped by past epidemics Caroline Colijn eLife
Impact of COVID-19 pandemic on HCV care cascade in Rwanda: Ecological study from July 2019 to June 2021 Naveed Janjua Clinical Liver Disease
From Policy to Prediction: Forecasting COVID-19 Dynamics Under Imperfect Vaccination Mark Lewis Bulletin of Mathematical Biology
Adapt or die: How the pandemic made the shift from EBM to EBM+ more urgent David Fisman BMJ Evidence-Based Medicine
Editorial: Statistical Data Science - Theory and Applications in Analyzing Omics Data Xuekui Zhang Frontiers in Applied Mathematics and Statistics
Routine programmatic data show a positive population-level impact of HIV self-testing: the case of Côte d'Ivoire and implications for implementation Mathieu Maheu-Giroux AIDS
Mathematical modelling of vaccination rollout and NPIs lifting on COVID-19 transmission with VOC: a case study in Toronto, Canada Julien Arino BMC Public Health
Invariance, Encodings, and Generalization: Learning Identity Effects With Neural Networks Paul Tupper Neural Computation
Longitudinal determinants of anal intercourse among women with, and without HIV in the United States Mathieu Maheu-Giroux BMC Women's Health
Transmission dynamics of SARS-CoV-2 in British Columbia’s largest school district during the second half of the 2020–2021 school year Natalie Prystajecky Canadian Journal of Public Health
Revisiting Transfer Functions: Learning About a Lagged Exposure-Outcome Association in Time-Series Data David Buckeridge International Journal of Public Health
Universal healthcare and the pandemic mortality gap David Fisman Proceedings of the National Academy of Sciences of the United States of America
Risk heterogeneity in compartmental HIV transmission models of ART as prevention in Sub-Saharan Africa: A scoping review Sharmistha Mishra Epidemics
Symptomatic and Asymptomatic Transmission of SARS-CoV-2 in K-12 Schools, British Columbia, Canada April to June 2021 Daniel Coombs Microbiology Spectrum
Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains Amy Hurford Journal of Evolutionary Biology
Seropositivity and risk factors for SARS-CoV-2 infection in a South Asian community in Ontario: a cross-sectional analysis of a prospective cohort study Mark Loeb CMAJ open
Local and Global Existence for Nonlocal Multispecies Advection-Diffusion Models Mark Lewis SIAM Journal on Applied Dynamical Systems
Spike Mutation Profiles Associated With SARS-CoV-2 Breakthrough Infections in Delta Emerging and Predominant Time Periods in British Columbia, Canada Caroline Colijn, Naveed Janjua, Natalie Prystajecky Frontiers in Public Health
The Canadian Statistical Sciences Institute 2003–2022 Donald Estep Canadian Journal of Statistics
The Collapse of Infectious Disease Diagnoses Commonly Due to Communicable Respiratory Pathogens during the Coronavirus Disease 2019 Pandemic: A Time Series and Hierarchical Clustering Analysis Doug Manuel Open Forum Infectious Diseases
Exploring the impact of military conflict on sex work in Ukraine: Women’s experiences of economic burden Sharmistha Mishra Global Public Health
Evaluating the impact of community interventions on childhood obesity in populations living in low-income households in Los Angeles: A simulation study Nathaniel Osgood Pediatric Obesity
Shorter versus longer durations of antibiotic treatment for patients with community-acquired pneumonia: a protocol for a systematic review and meta-analysis Mark Loeb BMJ open
Bistability in deterministic and stochastic SLIAR-type models with imperfect and waning vaccine protection Julien Arino Journal of Mathematical Biology
Growth delay: an alternative measure of population health based on child height distributions Diego Bassani Annals of Human Biology
Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination Dean Karlen eLife
The authors respond to criticisms of their model parameters David Fisman, Ashleigh Tuite CMAJ. Canadian Medical Association Journal
Staphylococcus aureus bacteremia mortality across country income groups: A secondary analysis of a systematic review Mark Loeb International Journal of Infectious Diseases
Survival Modelling for Data From Combined Cohorts: Opening the Door to Meta Survival Analyses and Survival Analysis Using Electronic Health Records David Buckeridge International Statistical Review
Evaluation of the bioMérieux VIDAS HIV Duo Quick and Anti-HCV assays for dried blood spot based serosurveillance Sharmistha Mishra Scientific Reports
The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants Benjamin Bolker, Jonathan Dushoff Journal of the Royal Society Interface
Seasonality of influenza and coseasonality with avian influenza in Bangladesh, 2010–19: a retrospective, time-series analysis David Fisman, Amy Greer The Lancet Global Health
Unbalanced selection: The challenge of maintaining a social polymorphism when a supergene is selfish Sarah Otto Philosophical Transactions of the Royal Society B: Biological Sciences
Comparative performance of the EuroQol EQ-5D-5L and the CDC healthy days measures in assessing population health Larry Svenson Journal of Patient-Reported Outcomes
EpiTopics: A dynamic machine learning model to predict and inform non-pharmacological public health interventions from global news reports David Buckeridge STAR Protocols
Downsizing of COVID-19 contact tracing in highly immune populations Amy Hurford PLoS ONE
Income inequality and population health: a political-economic research agenda Michael Wolfson Journal of Epidemiology and Community Health
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments Cedric Chauve iScience
18F-MK-6240 tau-PET in genetic frontotemporal dementia Jean-Paul Soucy Brain : a journal of neurology
Older Age and Frailty are Associated with Higher Mortality but Lower ICU Admission with COVID-19 Mark Loeb Canadian Geriatrics Journal
Human Salmonella enteritidis illness outbreak associated with exposure to live mice in British Columbia, Canada, 2018–2019 Natalie Prystajecky Zoonoses and Public Health
A Qualitative Comparison of the Abbott SARS-CoV-2 IgG II Quant Assay against Commonly Used Canadian SARS-CoV-2 Enzyme Immunoassays in Blood Donor Retention Specimens, April 2020 to March 2021 Ashleigh Tuite Microbiology Spectrum
Reactivity, Attenuation, and Transients in Metapopulations Mark Lewis SIAM Journal on Applied Dynamical Systems
A framework to model global, regional, and national estimates of intimate partner violence Mathieu Maheu-Giroux BMC Medical Research Methodology
Seropositivity to SARS-CoV-2 in Alberta, Canada in a post-vaccination period (March 2021–July 2021) Larry Svenson Infectious Diseases
Risk of hepatitis C reinfection following successful therapy among people living with HIV: a global systematic review, meta-analysis, and meta-regression Naveed Janjua The Lancet HIV
Analysis of overdispersion in airborne transmission of COVID-19 Sharmistha Mishra Physics of Fluids
Markers of systemic inflammation are positively associated with influenza vaccine antibody responses with a possible role for ILT2(+)CD57(+) NK-cells Mark Loeb Immunity and Ageing
Predictors of all-cause mortality among patients hospitalized with influenza, respiratory syncytial virus, or SARS-CoV-2 Rafal Kustra, Sharmistha Mishra Influenza and other Respiratory Viruses
A Conceptual Framework for Representing Events Under Public Health Surveillance David Buckeridge Studies in Health Technology and Informatics
Time trends in social contacts of individuals according to comorbidity and vaccination status, before and during the COVID-19 pandemic Marc Brisson BMC Medicine
Time trends in social contacts before and during the COVID-19 pandemic: the CONNECT study Marc Brisson BMC Public Health
Host Diversification May Split Epidemic Spread into Two Successive Fronts Advancing at Different Speeds Mark Lewis Bulletin of Mathematical Biology
Examining the role of person-to-person transmission during a verocytotoxigenic Escherichia coli outbreak in Ontario, Canada David Fisman, Amy Greer BMC Research Notes
A SARS-CoV-2 outbreak associated with vaccine breakthrough in an acute care hospital Mark Loeb American Journal of Infection Control
Identifying risk factors for prevalent anal human papillomavirus type 16 infection in women living with HIV Tyler Williamson, Tyler Williamson PLoS ONE
Risk Factors for SARS-CoV-2 Infection and Illness in Cats and Dogs Natalie Prystajecky Emerging Infectious Diseases
cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines Xuekui Zhang Briefings in Bioinformatics
Building knowledge, optimising physical and mental health and setting up healthier life trajectories in South African women (Bukhali): A preconception randomised control trial part of the Healthy Life Trajectories Initiative (HeLTI) Diego Bassani BMJ Open
A Mixed Integer Linear Programming Algorithm for Plasmid Binning Cedric Chauve Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Prevalence of bovine Babesia spp., Anaplasma marginale, and their co-infections in Latin America: Systematic review-meta-analysis Javier Sanchez Ticks and Tick-borne Diseases
Longitudinal SARS-CoV-2 RNA wastewater monitoring across a range of scales correlates with total and regional COVID-19 burden in a well-defined urban population Tyler Williamson, Tyler Williamson Water Research
Heal-me PiONEer (personalized online nutrition and exercise): An RCT assessing 2 levels of app-based programming in individuals with chronic disease Kate Harback, Jeff Round Contemporary Clinical Trials
Evaluating the Individual Healthcare Costs and Burden of Disease Associated with RSV Across Age Groups Larry Svenson PharmacoEconomics
Testing and Isolation Efficacy: Insights from a Simple Epidemic Model Benjamin Bolker, Jonathan Dushoff, David Earn Bulletin of Mathematical Biology
Effectiveness of the influenza vaccine at reducing adverse events in patients with heart failure: A systematic review and meta-analysis Mark Loeb Vaccine
HBV elimination in sub-Saharan Africa: Rwanda's approach to health system integration Naveed Janjua The Lancet Gastroenterology and Hepatology
Now or later: Health impacts of delaying single-dose HPV vaccine implementation in a high-burden setting Marc Brisson International Journal of Cancer
Screening Large Population Health Databases for Potential Coronavirus Disease 2019 Therapeutics: A Pharmacopeia-Wide Association Study of Commonly Prescribed Medications Doug Manuel Open Forum Infectious Diseases
Face masking and COVID-19: potential effects of variolation on transmission dynamics David Earn Journal of the Royal Society, Interface
Beyond resource selection: emergent spatio–temporal distributions from animal movements and stigmergent interactions Mark Lewis Oikos
Social Contacts and Transmission of COVID-19 in British Columbia, Canada Naveed Janjua Frontiers in Public Health
Population immunity to measles in Canada using Canadian Health Measures survey data – A Canadian Immunization Research Network (CIRN) study Marc Brisson Vaccine
Spreading speed of chronic wasting disease across deer groups with overlapping home ranges Mark Lewis Journal of Theoretical Biology
Mortality trends and length of stays among hospitalized patients with COVID-19 in Ontario and Québec (Canada): a population-based cohort study of the first three epidemic waves Marc Brisson, David Buckeridge, Mathieu Maheu-Giroux, Sharmistha Mishra International Journal of Infectious Diseases
Impact of population mixing between vaccinated and unvaccinated subpopulations on infectious disease dynamics: implications for SARS-CoV-2 transmission David Fisman, Ashleigh Tuite CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Vitamin D and Chronic Diseases among First-Generation Immigrants: A Large-Scale Study Using Canadian Health Measures Survey (CHMS) Data Doug Manuel Nutrients
From science to politics: COVID-19 information fatigue on YouTube Jonathan Dushoff, David Earn BMC Public Health
Nonpharmaceutical interventions to prevent viral respiratory infection in community settings: an umbrella review Mark Loeb ERJ Open Research
Efficacy of a "stay-at-home" policy on SARS-CoV-2 transmission in Toronto, Canada: a mathematical modelling study Julien Arino CMAJ open
Willingness to use and distribute HIV self-test kits to clients and partners: A qualitative analysis of female sex workers' collective opinion and attitude in Côte d'Ivoire, Mali, and Senegal Mathieu Maheu-Giroux Women's health (London, England)
A Rapid Literature Review of Multi-Criteria Decision Support Methods in the Context of One Health for All-Hazards Threat Prioritization Javier Sanchez Frontiers in Public Health
Time-dependent memory and individual variation in Arctic brown bears (Ursus arctos) Mark Lewis Movement Ecology
An Innovative Model of Pediatric Emergency Department Mental Health Care: Protocol for a Multicenter Type 1 Effectiveness-Implementation Cluster Randomized Trial Jeff Round Journal of the American Academy of Child and Adolescent Psychiatry
What Is the Optimal Follow-up Length for Mortality in Staphylococcus aureus Bacteremia? Observations From a Systematic Review of Attributable Mortality Mark Loeb Open Forum Infectious Diseases
Mathematical modeling of COVID-19 in British Columbia: An age-structured model with time-dependent contact rates Caroline Colijn, Daniel Coombs, Naveed Janjua Epidemics
Long-Term Persistence of Spike Protein Antibody and Predictive Modeling of Antibody Dynamics After Infection With Severe Acute Respiratory Syndrome Coronavirus 2 Caroline Colijn Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Single-dose mRNA Vaccine Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Including Alpha and Gamma Variants: A Test-negative Design in Adults 70 Years and Older in British Columbia, Canada Natalie Prystajecky Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
A wastewater-based epidemic model for SARS-CoV-2 with application to three Canadian cities Michael WZ Li Epidemics
A Hypothesis-Free Bridging of Disease Dynamics and Non-pharmaceutical Policies Mark Lewis Bulletin of Mathematical Biology
Sodium, Added Sugar and Saturated Fat Intake in Relation to Mortality and Cardiovascular Disease Events in Adults: Canadian National Nutrition Survey Linked with Vital Statistics and Health Administrative Databases Doug Manuel British Journal of Nutrition
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States Dean Karlen, Dean Karlen Proceedings of the National Academy of Sciences of the United States of America
Diversifying stem cell debates: Including Muslim contexts and perspectives Timothy Caulfield Stem Cell Reports
Network analysis of Standardbred horse movements between racetracks in Canada and the United States in 2019: Implications for disease spread and control Amy Greer Preventive Veterinary Medicine
SARS-CoV-2 seroprevalence among Vancouver public school staff in British Columbia, Canada: A cross-sectional study Daniel Coombs BMJ Open
Characterizing posttraumatic stress disorder in primary care using electronic medical records: a retrospective cohort study Tyler Williamson, Tyler Williamson Annals of family medicine
One child, one appointment: how institutional discourses organize the work of parents and nurses in the provision of childhood vaccination for First Nations children Larry Svenson Human Vaccines and Immunotherapeutics
The territories: Inverting innovation for Canada's north Sara McPhee-Knowles Ideas, Institutions, and Interests: The Drivers of Canadian Provincial Science, Technology, and Innovation Policy
Tracking Public Attitudes Toward COVID-19 Vaccination on Tweets in Canada: Using Aspect-Based Sentiment Analysis Naveed Janjua Journal of Medical Internet Research
Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic Sandrine Moreira Frontiers in Genetics
Sharpening the Universality of Network Resilience Patterns using Motifs Sean Cornelius Journal of Physics: Conference Series
Transmission Dynamics of COVID-19 Daniel Coombs World Scientific Series in Global Health Economics and Public Policy
Staphylococcus aureus bacteraemia mortality: a systematic review and meta-analysis Mark Loeb Clinical Microbiology and Infection
Nutritionally rich wildflower patches adjacent to nutritionally deficient crops significantly increase pollination services Rebecca Tyson Ecological Modelling
Disease transmission and mass gatherings: a case study on meningococcal infection during Hajj Julien Arino BMC Infectious Diseases
Recalibrated estimates of non-bacteremic and bacteremic pneumococcal community acquired pneumonia in hospitalized Canadian adults from 2010 to 2017 with addition of an extended spectrum serotype-specific urine antigen detection assay Mark Loeb Vaccine
Construction status and prospects of the Hyper-Kamiokande project Dean Karlen Proceedings of Science
Prospects for neutrino astrophysics with Hyper-Kamiokande Dean Karlen Proceedings of Science
LAG-1: A dynamic, integrative model of learning, attention, and gaze Paul Tupper PloS one
The Importance of and Challenges with Adopting Life-Cycle Regulation and Reimbursement in Canada Christopher McCabe Healthcare policy = Politiques de sante
In-Hospital Macro-, Meso-, and Micro-Drivers and Interventions for Antibiotic Use and Resistance: A Rapid Evidence Synthesis of Data from Canada and Other OECD Countries Mark Loeb Canadian Journal of Infectious Diseases and Medical Microbiology
Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa Jonathan Dushoff Science
COVID-19 and Vitamin D Misinformation on YouTube: Content Analysis Timothy Caulfield JMIR Infodemiology
Reducing readmission rates for individuals discharged from acute psychiatric care in Alberta using peer and text message support: Protocol for an innovative supportive program Christopher McCabe BMC Health Services Research
Impact of an addiction medicine consult team intervention in a Canadian inner city hospital on acute care utilization: a pragmatic quasi-experimental study Christopher McCabe Substance Abuse: Treatment, Prevention, and Policy
Energy-based step selection analysis: Modelling the energetic drivers of animal movement and habitat use Mark Lewis Journal of Animal Ecology
The diagonal approach: A theoretic framework for the economic evaluation of vertical and horizontal interventions in healthcare Jeff Round Social Science and Medicine
Comparison of mortality hazard ratios associated with health behaviours in Canada and the United States: a population-based linked health survey study Doug Manuel BMC Public Health
A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities Jesse Shapiro mSystems
Routinized Syphilis Screening Among Men Living With Human Immunodeficiency Virus: A Stepped Wedge Cluster Randomized Controlled Trial David Fisman, Sharmistha Mishra Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
The Association Between Self-Reported Non-Injection Cocaine Use and Hepatitis C in the United States: An Analysis of the National Health and Nutrition Examination Survey David Fisman Journal of studies on alcohol and drugs
An observational cohort study of health outcomes and costs associated with early pregnancy assessment units in the UK Jeff Round BMC Health Services Research
Sporadic SARS-CoV-2 cases at the neighbourhood level in Toronto, Ontario, 2020: a spatial analysis of the early pandemic period David Fisman, Amy Greer, Ashleigh Tuite CMAJ open
PSMA PET/CT guided intensification of therapy in patients at risk of advanced prostate cancer (PATRON): a pragmatic phase III randomized controlled trial Christopher McCabe BMC Cancer
Primary Care: The Actual Intelligence Required for Artificial Intelligence to Advance Health Care and Improve Health Tyler Williamson JMIR Medical Informatics
Past dynamics of HIV transmission among men who have sex with men in Montréal, Canada: a mathematical modeling study Mathieu Maheu-Giroux, Sharmistha Mishra BMC Infectious Diseases
Transmission dynamics are crucial to COVID-19 vaccination policy Benjamin Bolker, Caroline Colijn, Jonathan Dushoff, David Earn Proceedings of the National Academy of Sciences of the United States of America
Acceleration of plague outbreaks in the second pandemic Benjamin Bolker, Jonathan Dushoff, David Earn Proceedings of the National Academy of Sciences of the United States of America
Forward-looking serial intervals correctly link epidemic growth to reproduction numbers Benjamin Bolker, Jonathan Dushoff, David Earn Proceedings of the National Academy of Sciences of the United States of America
Event-specific interventions to minimize COVID-19 transmission Caroline Colijn, Paul Tupper Proceedings of the National Academy of Sciences of the United States of America
Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillations Jonathan Dushoff Proceedings of the National Academy of Sciences of the United States of America
Asymptomatic infection is the pandemic’s dark matter David Fisman, Ashleigh Tuite Proceedings of the National Academy of Sciences of the United States of America
Direct financial assistance for improved maternal and child health data: a pilot study supporting the health management information system in Malawi Diego Bassani BMC Health Services Research
Human ectoparasite transmission of the plague during the Second Pandemic is only weakly supported by proposed mathematical models Benjamin Bolker, David Earn Proceedings of the National Academy of Sciences of the United States of America
Cystic fibrosis heterozygosity: Carrier state or haploinsufficiency? David Fisman Proceedings of the National Academy of Sciences of the United States of America
The dags of war David Fisman Proceedings of the National Academy of Sciences of the United States of America
Pharmacogenetics and progression to neovascular age-related macular degeneration-Evidence supporting practice change Rafal Kustra Proceedings of the National Academy of Sciences of the United States of America
A unifying framework for the transient parasite dynamics of migratory hosts Mark Lewis Proceedings of the National Academy of Sciences of the United States of America
Resource limitation prevents the emergence of drug resistance by intensifying within-host competition Troy Day Proceedings of the National Academy of Sciences of the United States of America
CFH and ARMS2 genetic risk determines progression to neovascular age-related macular degeneration after antioxidant and zinc supplementation Rafal Kustra Proceedings of the National Academy of Sciences of the United States of America
10-Year Trends in Healthcare Spending among Patients with Schizophrenia in Alberta, Canada Tyler Williamson Canadian Journal of Psychiatry
Dispensability of Escherichia coli's latent pathways Sean Cornelius Proceedings of the National Academy of Sciences of the United States of America
Stochastic branching-diffusion models for gene expression Paul Tupper Proceedings of the National Academy of Sciences of the United States of America
Reporting of Model Performance and Statistical Methods in Studies That Use Machine Learning to Develop Clinical Prediction Models: Protocol for a Systematic Review Tyler Williamson JMIR Research Protocols
The Anti-Coronavirus Therapies (ACT) Trials: Design, Baseline Characteristics, and Challenges Mark Loeb CJC Open
The Impact of Current Opioid Agonist Therapy on Hepatitis C Virus Treatment Initiation among People Who Use Drugs from the Direct-acting Antiviral (DAA) Era: A Population-Based Study Naveed Janjua Clinical Infectious Diseases
Health-related quality of life of female sex workers living with HIV in South Africa: a cross-sectional study Sharmistha Mishra Journal of the International AIDS Society
Gaps in hepatitis C virus prevention and care for HIV-hepatitis C virus co-infected people who inject drugs in Canada Mathieu Maheu-Giroux International Journal of Drug Policy
Panel on Simulation Modeling for Covid-19 Dionne Aleman, Alexander Rutherford Proceedings - Winter Simulation Conference
Estimating SARS-CoV-2 Seroprevalence in Canadian Blood Donors, April 2020 to March 2021: Improving Accuracy with Multiple Assays David Fisman, Ashleigh Tuite Microbiology Spectrum
Stringency of containment and closures on the growth of SARS-CoV-2 in Canada prior to accelerated vaccine roll-out Mathieu Maheu-Giroux, Sharmistha Mishra, Tyler Williamson International Journal of Infectious Diseases
Defining a Core Data Set for the Economic Evaluation of Precision Oncology Christopher McCabe Value in Health
A Systematic Evaluation of Supervised Machine Learning Algorithms for Cell Phenotype Classification Using Single-Cell RNA Sequencing Data Xuekui Zhang Frontiers in Genetics
Parental Population Range Expansion before Secondary Contact Promotes Heterosis Sarah Otto American Naturalist
RESEARCH ARTICLE Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis Caroline Colijn PLoS Medicine
British Columbia’s Index of Multiple Deprivation for Community Health Service Areas Naveed Janjua Data
Community-Acquired Pneumonia in Canada during Coronavirus Disease 2019 Mark Loeb Open Forum Infectious Diseases
Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages Jesse Shapiro Frontiers in Medicine
SuPART: Supervised projective adapted resonance theory for automatic quality assurance approval of radiotherapy treatment plans Dionne Aleman Physics in Medicine and Biology
Global change in hepatitis C virus prevalence and cascade of care between 2015 and 2020: a modelling study Naveed Janjua The Lancet Gastroenterology and Hepatology
Global, regional, and national prevalence estimates of physical or sexual, or both, intimate partner violence against women in 2018 Mathieu Maheu-Giroux The Lancet
Novel informatics approaches to COVID-19 Research: From methods to applications David Buckeridge Journal of Biomedical Informatics
Healthy food prescription incentive programme for adults with type 2 diabetes who are experiencing food insecurity: Protocol for a randomised controlled trial, modelling and implementation studies Tyler Williamson BMJ Open
Geographic concentration of SARS-CoV-2 cases by social determinants of health in metropolitan areas in Canada: a cross-sectional study Marc Brisson, David Buckeridge, Naveed Janjua, Rafal Kustra, Mathieu Maheu-Giroux, Sharmistha Mishra, Tyler Williamson CMAJ
Genion, an accurate tool to detect gene fusion from long transcriptomics reads Cedric Chauve BMC Genomics
Oxidation to Control Cyanobacteria and Cyanotoxins in Drinking Water Treatment Plants: Challenges at the Laboratory and Full‐Scale Plants Jesse Shapiro Water (Switzerland)
Duration and cost-effectiveness of hepatocellular carcinoma surveillance in hepatitis C patients after viral eradication Naveed Janjua Journal of Hepatology
Estimating naloxone need in the USA across fentanyl, heroin, and prescription opioid epidemics: a modelling study Daniel Coombs The Lancet Public Health
Modelling vaccination strategies for COVID-19 Caroline Wagner Nature Reviews Immunology
Ranavirus Amplification in Low-Diversity Amphibian Communities Amy Greer Frontiers in Veterinary Science
Socioeconomic position and consumption of sugary drinks, sugar-sweetened beverages and 100% juice among Canadians: a cross-sectional analysis of the 2015 Canadian Community Health Survey–Nutrition Doug Manuel Canadian Journal of Public Health
Describing, Modelling and Forecasting the Spatial and Temporal Spread of COVID-19: A Short Review Julien Arino Fields Institute Communications
Evaluating the Risk of Reopening the Border: A Case Study of Ontario (Canada) to New York (USA) Using Mathematical Modeling Julien Arino Fields Institute Communications
Don’t Wait, Re-escalate: Delayed Action Results in Longer Duration of COVID-19 Restrictions Amy Hurford Fields Institute Communications
SARS-CoV-2 Omicron Spike recognition by plasma from individuals receiving BNT162b2 mRNA vaccination with a 16-week interval between doses Sandrine Moreira Cell Reports
A Conceptual Framework for Life-Cycle Health Technology Assessment Christopher McCabe, Jeff Round Value in Health
The Aging, Community and Health Research Unit Community Partnership Program (ACHRU-CPP) for older adults with diabetes and multiple chronic conditions: study protocol for a randomized controlled trial Tyler Williamson BMC Geriatrics
Transmission of SARS-CoV-2: still up in the air – Authors' reply David Fisman The Lancet
CFH and ARMS2 polymorphisms interact with zinc supplements in cognitive impairment in the women's health initiative hormone trial Rafal Kustra Journal of Alzheimer's Disease
Inactivated and live-attenuated seasonal influenza vaccines boost broadly neutralizing antibodies in children Mark Loeb Cell Reports Medicine
Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes Jesse Shapiro Harmful Algae
Operational assessment tool for forest carbon dynamics for the United States: a new spatially explicit approach linking the LUCAS and CBM-CFS3 models Colin Daniel Carbon Balance and Management
Sex differences in comorbidity at diagnosis of multiple sclerosis Larry Svenson Neurology
Development of the Standards of Reporting of Neurological Disorders (STROND) checklist: A guideline for the reporting of inciden ce and prevalence studies in neuroe pidemiology Larry Svenson Neurology
The role of prisons in disseminating tuberculosis in Brazil: A genomic epidemiology study Caroline Colijn The Lancet Regional Health - Americas
Inferring global-scale temporal latent topics from news reports to predict public health interventions for COVID-19 David Buckeridge Patterns
Genome Canada precision medicine strategy for structured national implementation of epitope matching in renal transplantation Timothy Caulfield Human Immunology
Exploring social inequalities in healthcare trajectories following diagnosis of diabetes: a state sequence analysis of linked survey and administrative data David Buckeridge BMC Health Services Research
A Fisher–KPP Model with a Nonlocal Weighted Free Boundary: Analysis of How Habitat Boundaries Expand, Balance or Shrink Mark Lewis Bulletin of Mathematical Biology
Savannas are vital but overlooked carbon sinks Sarah Otto Science
Population sizes, HIV prevalence, and HIV prevention among men who paid for sex in sub-Saharan Africa (2000-2020): A metaanalysis of 87 population-based surveys Mathieu Maheu-Giroux PLoS Medicine
Deep ROC Analysis and AUC as Balanced Average Accuracy, for Improved Classifier Selection, Audit and Explanation Doug Manuel IEEE Transactions on Pattern Analysis and Machine Intelligence
Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity Jesse Shapiro mBio
Impact of the COVID-19 pandemic on vaccine coverage for early childhood vaccines in Alberta, Canada: A population-based retrospective cohort study Larry Svenson BMJ Open
Long-term Functional Outcomes among Older Adults Undergoing Video-assisted Versus Open Surgery for Lung Cancer: A Population-based Cohort Study Doug Manuel Annals of Surgery
Validity of ICD-10 codes for COVID-19 patients with hospital admissions or ED visits in Canada: A retrospective cohort study Tyler Williamson BMJ Open
Research, Digital Health Information and Promises of Privacy: Revisiting the Issue of Consent Timothy Caulfield Canadian Journal of Bioethics
Multi-stage graph peeling algorithm for probabilistic core decomposition Xuekui Zhang Proceedings of the 2021 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2021
Integrative COVID-19 biological network inference with probabilistic core decomposition Xuekui Zhang Briefings in Bioinformatics
Reconsenting paediatric research participants for use of identifying data Timothy Caulfield Journal of Medical Ethics
Coupling the socio-economic and ecological dynamics of cyanobacteria: Single lake and network dynamics Mark Lewis Ecological Economics
Chemsex and incidence of sexually transmitted infections among Canadian pre-exposure prophylaxis (PrEP) users in the l'Actuel PrEP Cohort (2013-2020) Mathieu Maheu-Giroux Sexually Transmitted Infections
COVID-19 Vaccination Uptake Among Individuals With Immune-mediated Inflammatory Diseases in Ontario, Canada, Between December 2020 and October 2021: A Population-based Analysis Larry Svenson Journal of Rheumatology
HCC incidence after hepatitis C cure among patients with advanced fibrosis or cirrhosis: A meta-analysis Naveed Janjua Hepatology
Antigenicity of the Mu (B.1.621) and A.2.5 SARS-CoV-2 Spikes Sandrine Moreira Viruses
Innovative vaccine approaches—a Keystone Symposia report Caroline Wagner Annals of the New York Academy of Sciences
Quantifying transmissibility of SARS-CoV-2 and impact of intervention within long-term healthcare facilities Caroline Colijn, Daniel Coombs, Naveed Janjua Royal Society Open Science
Association between Prescription Opioid Therapy for Noncancer Pain and Hepatitis C Virus Seroconversion Naveed Janjua JAMA Network Open
Canadian Dairy Network for Antimicrobial Stewardship and Resistance (CaDNetASR): An On-Farm Surveillance System Javier Sanchez Frontiers in Veterinary Science
Comparison of longitudinal trends in self-reported symptoms and COVID-19 case activity in Ontario, Canada David Fisman, Ashleigh Tuite PLoS ONE
Transient prophylaxis and multiple epidemic waves Rebecca Tyson AIMS Mathematics
Is it possible to recruit HIV self-test users for an anonymous phone-based survey using passive recruitment without financial incentives? Lessons learned from a pilot study in Côte d’Ivoire Mathieu Maheu-Giroux Pilot and Feasibility Studies
Modeling the early transmission of COVID-19 in New York and San Francisco using a pairwise network model Mark Lewis Infectious Disease Modelling
The prevalence of Cyclospora cayetanensis in water: A systematic review and meta-analysis Amy Greer Epidemiology and Infection
Real world evidence of the association between medication and life expectancy in elderly inflammatory bowel disease: a population-based cohort study Doug Manuel BMC Gastroenterology
COVID-19: Yukon’s experience with travel restriction and the unvaccinated Lisa Kanary, Sara McPhee-Knowles Canada Communicable Disease Report
The role of digital tools in the delivery of genomic medicine: enhancing patient-centered care Timothy Caulfield Genetics in Medicine
Effectiveness of the Genomics ADvISER decision aid for the selection of secondary findings from genomic sequencing: a randomized clinical trial Timothy Caulfield Genetics in Medicine
CRISPR in the North American popular press Timothy Caulfield Genetics in Medicine
Potential of polygenic risk scores for improving population estimates of women’s breast cancer genetic risks Michael Wolfson Genetics in Medicine
Foreword Timothy Caulfield Communication and Health: Media, Marketing and Risk
An epidemiological approach to studying building indoor climate David Fisman 17th International Conference on Indoor Air Quality and Climate, INDOOR AIR 2022
Effect of Colchicine vs Usual Care Alone on Intubation and 28-Day Mortality in Patients Hospitalized with COVID-19: A Randomized Clinical Trial Mark Loeb JAMA Network Open
A pilot case-control study of the social media activity following cluster and non-cluster suicides in Australia Nathaniel Osgood International Journal of Environmental Research and Public Health
Adaptive data-driven age and patch mixing in contact networks with recurrent mobility Sharmistha Mishra MethodsX
The contrast between clear and plain speaking style for Mandarin tones Paul Tupper Journal of the Acoustical Society of America
Covid-19 seroprevalence in canada modelling waning and boosting covid-19 immunity in canada a canadian immunization research network study David Buckeridge Vaccines
Declining incidence of hepatitis C related hepatocellular carcinoma in the era of interferon-free therapies: A population-based cohort study Naveed Janjua Liver International
Disease-modifying drugs for multiple sclerosis and subsequent health service use Larry Svenson Multiple Sclerosis Journal
Network science inspires novel tree shape statistics Caroline Colijn PLoS ONE
COVID-19 pandemic impact on childhood vaccination coverage in Quebec, Canada Larry Svenson Human Vaccines and Immunotherapeutics
Rotational worker vaccination provides indirect protection to vulnerable groups in regions with low COVID-19 prevalence Amy Hurford AIMS Mathematics
Repeated measures discriminant analysis using multivariate generalized estimation equations Tyler Williamson Statistical Methods in Medical Research
The frequency of interleukin-1β-producing monocytes is significantly associated with varicella-zoster responses of nursing home residents Mark Loeb Clinical and Experimental Immunology
Combined Clinical Audits and Low-Dose, High-frequency, In-service Training of Health Care Providers and Community Health Workers to Improve Maternal and Newborn Health in Mali: Protocol for a Pragmatic Cluster Randomized Trial Diego Bassani JMIR Research Protocols
Family and child risk factors for early-life RSV illness David Fisman Pediatrics
Opportunities to Enhance Linkage to Hepatitis C Care Among Hospitalized People With Recent Drug Dependence in New South Wales, Australia: A Population-based Linkage Study Naveed Janjua Clinical Infectious Diseases
The evolution of age-specific choosiness and reproductive isolation in a model with overlapping generations Troy Day Evolution
Bayesian clustering for continuous-time hidden Markov models David Buckeridge Canadian Journal of Statistics
Special Collection: Celebrating J.D. Murray’s Contributions to Mathematical Biology Mark Lewis Bulletin of Mathematical Biology
Breastfeeding and maternal cardiovascular risk factors: 1982 Pelotas Birth Cohort Diego Bassani Scientific Reports
Quality of life drives patients’ preferences for secondary findings from genomic sequencing Timothy Caulfield European Journal of Human Genetics
Development of patient “profiles” to tailor counseling for incidental genomic sequencing results Timothy Caulfield European Journal of Human Genetics
Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures Caroline Colijn ISME Journal
Fundamental limitations of contact tracing for COVID-19 Caroline Colijn, Sarah Otto, Paul Tupper Facets
Designing ecologically optimized pneumococcal vaccines using population genomics Caroline Colijn Nature Microbiology
Limitations of Qdot labelling compared to directly-conjugated probes for single particle tracking of B cell receptor mobility Daniel Coombs Scientific Reports
Evolution of cooperation on temporal networks Sean Cornelius Nature Communications
Realistic control of network dynamics Sean Cornelius Nature Communications
Female plasticity tends to reduce sexual conflict Troy Day Nature Ecology and Evolution
Modeling shield immunity to reduce COVID-19 epidemic spread Jonathan Dushoff Nature Medicine
Couple serostatus patterns in sub-Saharan Africa illuminate the relative roles of transmission rates and sexual network characteristics in HIV epidemiology Jonathan Dushoff Scientific Reports
A sub-national real-time epidemiological and vaccination database for the COVID-19 pandemic in Canada David Fisman, Amy Greer, Shelby Sturrock, Ashleigh Tuite Scientific Data
Social vulnerability in persons with chronic hepatitis C virus infection is associated with a higher risk of prescription opioid use Naveed Janjua Scientific Reports
Extended fisheries recovery timelines in a changing environment Lisa Kanary Nature Communications
Constraint on the matter–antimatter symmetry-violating phase in neutrino oscillations Dean Karlen, Dean Karlen Nature
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary Rafal Kustra Nature Structural and Molecular Biology
Accurate long-range forecasting of COVID-19 mortality in the USA Mark Lewis Scientific Reports
Factors governing outbreak dynamics in a forest intensively managed for mountain pine beetle Mark Lewis Scientific Reports
Cost-effectiveness analysis of multigene expression profiling assays to guide adjuvant therapy decisions in women with invasive early-stage breast cancer Christopher McCabe Pharmacogenomics Journal
Addendum: Low-value approvals and high prices might incentivize ineffective drug development Christopher McCabe Nature reviews. Clinical oncology
Low-value approvals and high prices might incentivize ineffective drug development Christopher McCabe Nature Reviews Clinical Oncology
Keeping it complicated: Mitochondrial genome plasticity across diplonemids Sandrine Moreira Scientific Reports
A dynamic modelling analysis of the impact of tobacco control programs on population-level nicotine dependence Nathaniel Osgood Scientific Reports
Potential group B Streptococcus interspecies transmission between cattle and people in Colombian dairy farms Javier Sanchez Scientific Reports
Community rescue in experimental phytoplankton communities facing severe herbicide pollution Jesse Shapiro Nature Ecology and Evolution
Coherence of Microcystis species revealed through population genomics Jesse Shapiro ISME Journal
The population genetics of pangenomes Jesse Shapiro Nature Microbiology
The limits of SARS-CoV-2 predictability Caroline Wagner Nature Ecology and Evolution
Epidemic dynamics of respiratory syncytial virus in current and future climates Caroline Wagner Nature Communications
Probing the potential of mucus permeability to signify preterm birth risk Caroline Wagner Scientific Reports
Chronic obstructive pulmonary disease as a risk factor in primary care: a Canadian retrospective cohort study Tyler Williamson npj Primary Care Respiratory Medicine
Model-based clustering for identifying disease-associated SNPs in case-control genome-wide association studies Xuekui Zhang Scientific Reports
High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast Xuekui Zhang Nature Structural and Molecular Biology
A novel multiplex electrochemiluminescent immunoassay for detection and quantification of anti-SARS-CoV-2 IgG and anti-seasonal endemic human coronavirus IgG Natalie Prystajecky Journal of Clinical Virology
Comparing reliability of ICD-10-based COVID-19 comorbidity data to manual chart review, a retrospective cross-sectional study Michael WZ Li Journal of Medical Virology
Differences in the organisation of early pregnancy units and the effect of senior clinician presence, volume of patients and weekend opening on emergency hospital admissions: Findings from the VESPA Study Jeff Round PLoS ONE
Understanding machine learning classifier decisions in automated radiotherapy quality assurance Dionne Aleman Physics in Medicine and Biology
A Universal Separable Diversity Paul Tupper Analysis and Geometry in Metric Spaces
An app-based mindfulness-based self-compassion program to support caregivers of people with dementia: Participatory feasibility study Nathaniel Osgood JMIR Aging
Rural vs urban inequalities in stage at diagnosis for lung cancer Nathaniel Osgood Cancer Treatment and Research Communications
Fixation and effective size in a haploid–diploid population with asexual reproduction Sarah Otto Theoretical Population Biology
Cross-sectional study of antimicrobial use and treatment decision for preweaning Canadian dairy calves Javier Sanchez JDS Communications
Correction to: A Population-Based Analysis of Long-Term Outcomes Among Older Adults Requiring Unexpected Intensive Care Unit Admission After Cancer Surgery (Annals of Surgical Oncology, (2021), 28, 12, (7014-7024), 10.1245/s10434-021-10705-8) Doug Manuel Annals of Surgical Oncology
Tobacco messages encountered in real-time among low socio-economic position groups: a descriptive study Nathaniel Osgood BMC Public Health
Stunting: Prevalence and prevention Diego Bassani Encyclopedia of Human Nutrition: Volume 1-4, Fourth Edition
A multi-country investigation of influenza vaccine coverage in pregnant individuals, 2010–2016 Larry Svenson Vaccine
Prescription opioid treatment for non-cancer pain and initiation of injection drug use: Large retrospective cohort study Naveed Janjua The BMJ
Users’ perceptions about receiving personalized depression risk information: findings from a qualitative study Doug Manuel BMC Psychiatry
The Impact of COVID-19 on Outpatient Antibiotic Prescriptions in Ontario, Canada; An Interrupted Time Series Analysis Doug Manuel Open Forum Infectious Diseases
Genic Selection Within Prokaryotic Pangenomes Jesse Shapiro Genome biology and evolution
The economics of managing evolution Troy Day PLoS Biology
Learning Quantities of Interest from dynamical systems for observation-consistent inversion Donald Estep Computer Methods in Applied Mechanics and Engineering
Population health surveillance using mobile phone surveys in low- And middle-income countries: Methodology and sample representativeness of a cross-sectional survey of live poultry exposure in bangladesh David Fisman, Amy Greer JMIR Public Health and Surveillance
Strategies for working across Canadian practice-based research and learning networks (PBRLNs) in primary care: focus on frailty Tyler Williamson BMC Family Practice
Frequency and patterns of exposure to live poultry and the potential risk of avian influenza transmission to humans in urban Bangladesh David Fisman, Amy Greer Scientific Reports
Quantifying contact patterns in response to COVID-19 public health measures in Canada David Fisman, Amy Greer, Ashleigh Tuite BMC Public Health
Evaluating the relationship between myocarditis and mRNA vaccination Mark Loeb Expert Review of Vaccines
Memory-guided foraging and landscape design interact to determine ecosystem services Rebecca Tyson Journal of Theoretical Biology
Spatio-Temporal Variation in the Prevalence of Major Mastitis Pathogens Isolated From Bovine Milk Samples Between 2008 and 2017 in Ontario, Canada Amy Greer Frontiers in Veterinary Science
Mental health and substance use associated with hospitalization among people with COVID-19: A population-based cohort study Naveed Janjua, Natalie Prystajecky Viruses
Establishing healthcare worker performance and safety in providing critical care for patients in a simulated ebola treatment unit: Non-randomized pilot study Sharmistha Mishra Viruses
Opioid prescribing among new users for non-cancer pain in the USA, Canada, UK, and Taiwan: A population-based cohort study David Buckeridge PLoS Medicine
Association of demographic, career, and lifestyle factors with resilience and association of resilience with mental health outcomes in veterinarians in Canada Amy Greer Journal of the American Veterinary Medical Association
COVID-19 in an immunocompromised host: persistent shedding of viable SARS-CoV-2 and emergence of multiple mutations: a case report Natalie Prystajecky International Journal of Infectious Diseases
Mutations in emerging variant of concern lineages disrupt genomic sequencing of SARS-CoV-2 clinical specimens Natalie Prystajecky International Journal of Infectious Diseases
Risk of cardiovascular diseases in relation to substance use disorders Naveed Janjua Drug and Alcohol Dependence
Detecting seasonal episodic-like spatio-temporal memory patterns using animal movement modelling Mark Lewis Methods in Ecology and Evolution
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada Sandrine Moreira, Jesse Shapiro Genome Medicine
Evaluating Montreál's harm reduction interventions for people who inject drugs: Protocol for observational study and cost-effectiveness analysis David Buckeridge, Mathieu Maheu-Giroux BMJ Open
Derivation and Internal Validation of a Model to Predict the Probability of Severe Acute Respiratory Syndrome Coronavirus-2 Infection in Community People Doug Manuel Journal of General Internal Medicine
Adjuvanted trivalent influenza vaccine versus quadrivalent inactivated influenza vaccine in Hutterite Children: A randomized clinical trial David Earn, Mark Loeb Vaccine
Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents Natalie Prystajecky Journal of Virological Methods
Adolescents’ experiences with group antenatal care: Insights from a mixed-methods study in Senegal Diego Bassani Tropical Medicine and International Health
Resistance of SARS-CoV-2 beta and gamma variants to plasma collected from Canadian blood donors during the spring of 2020 David Fisman, Ashleigh Tuite Transfusion
Changing patterns of disease severity in blastomyces dermatitidis infection, quebec, canada Sandrine Moreira Emerging Infectious Diseases
Rapid increase in sars-cov-2 p.1 lineage leading to codominance with b.1.1.7 lineage, british columbia, canada, january-april 2021 Natalie Prystajecky Emerging Infectious Diseases
Length of Stay and Home Discharge for Patients with Inpatient Stroke Rehabilitation Jeff Round Canadian Journal of Neurological Sciences
Measurement of the charged-current electron (anti-)neutrino inclusive cross-sections at the T2K off-axis near detector ND280 Dean Karlen, Dean Karlen Journal of High Energy Physics
Effect of inactivated influenza vaccination on human coronavirus infection: Secondary analysis of a randomized trial in Hutterite colonies Mark Loeb Vaccine
Enthusiasm for Introducing and Integrating HIV Self-Testing but Doubts About Users: A Baseline Qualitative Analysis of Key Stakeholders' Attitudes and Perceptions in Côte d'Ivoire, Mali and Senegal Mathieu Maheu-Giroux Frontiers in Public Health
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater Natalie Prystajecky mSystems
Dynamic Computational Models and Simulations of the Opioid Crisis: A Comprehensive Survey Nathaniel Osgood ACM Transactions on Computing for Healthcare
Confidence interval of risk difference by different statistical methods and its impact on the study conclusion in antibiotic non-inferiority trials Mark Loeb Trials
Immune life history, vaccination, and the dynamics of SARS-CoV-2 over the next 5 years Caroline Wagner Science
Call for transparency of COVID-19 models David Earn, Nathaniel Osgood Science
Interpersonal counselling versus perinatal-specific cognitive behavioural therapy for women with depression during pregnancy offered in routine psychological treatment services: a phase II randomised trial Jeff Round BMC Psychiatry
Drug overdose and the risk of cardiovascular diseases: a nested case–control study Naveed Janjua Clinical Research in Cardiology
Differential equation model for central-place foragers with memory: implications for bumble bee crop pollination Rebecca Tyson Journal of Mathematical Biology
Infectious disease in an era of global change Caroline Wagner Nature Reviews Microbiology
Investigate the origins of COVID-19 David Fisman Science
Connect 2 Care, a Novel Community Outreach Program for Vulnerably Housed Patients With High Acute Care Use: A Mixed-Methods Study Protocol Tyler Williamson Frontiers in Public Health
Methodological and Reporting Quality of Noninferiority Randomized Controlled Trials Comparing Antibiotic Therapies: A Systematic Review Mark Loeb Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Long time frames to detect the impact of changing COVID-19 measures, Canada, March to July 2020 Caroline Colijn Eurosurveillance
Characteristics of new hiv diagnoses over 1995-2019: A clinic-based study in montréal, Canada Mathieu Maheu-Giroux PLoS ONE
Small parsimony for natural genomes in the DCJ-indel model Cedric Chauve Journal of Bioinformatics and Computational Biology
Consensus (Convergence of Opinion on Recommendations and Evidence [CORE]) Versus Systematic (Grading of Recommendations Assessment, Development, and Evaluation [GRADE]) Approach to Development of Guidelines for Community-acquired Pneumonia Mark Loeb Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Phase tipping: How cyclic ecosystems respond to contemporary climate Rebecca Tyson Proceedings of the Royal Society B: Biological Sciences
Response Caroline Wagner Science
Evaluation of the relative virulence of novel SARS-CoV-2 variants: a retrospective cohort study in Ontario, Canada David Fisman, Ashleigh Tuite CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Evaluation of the clinical and analytical performance of the Seegene allplex™ SARS-CoV-2 variants I assay for the detection of variants of concern (VOC) and variants of interests (VOI) Natalie Prystajecky Journal of Clinical Virology
The Hydroxychloroquine Twitter War: A case study examining polarization in science communication Timothy Caulfield First Monday
Risk Factors for the Incidence of and the Mortality due to Post-Transplant Lymphoproliferative Disorder after Hematopoietic Cell Transplantation Tyler Williamson Transplantation and Cellular Therapy
Impact of COVID-19-related public health measures on HCV testing in British Columbia, Canada: An interrupted time series analysis Naveed Janjua Liver International
Single-colony sequencing reveals microbe-by-microbiome phylosymbiosis between the cyanobacterium Microcystis and its associated bacteria Jesse Shapiro Microbiome
Anal Human Papillomavirus Prevalence Among Vaccinated and Unvaccinated Gay, Bisexual, and Other Men Who Have Sex With Men in Canada Marc Brisson Sexually Transmitted Diseases
Automated identification of maximal differential cell populations in flow cytometry data Cedric Chauve Cytometry Part A
Antibody and cellular therapies for treatment of covid-19: A living systematic review and network meta-analysis Mark Loeb The BMJ
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) seroprevalence: Navigating the absence of a gold standard David Fisman, Ashleigh Tuite PLoS ONE
Vaccine nationalism and the dynamics and control of SARS-CoV-2 Caroline Wagner Science
Population Health and COVID-19 in Canada: a Demographic Comparative Perspective David Fisman Canadian Studies in Population
Modelling song popularity as a contagious process Benjamin Bolker, David Earn Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
Refining global HIV estimates for decision-making: advances in analytic and modelling methods used by the Joint United Nations Programme on HIV/AIDS Mathieu Maheu-Giroux Journal of the International AIDS Society
Psychotropic prescribing rates and pharmacogenomic testing implications for autism in the Canadian primary care sentinel surveillance network Tyler Williamson, Tyler Williamson Pharmacogenetics and Genomics
A longitudinal dataset of incidence and intervention policy impacts regarding the COVID-19 pandemic in Canadian provinces Mark Lewis Data in Brief
The viral hepatitis B care cascade: A population-based comparison of immigrant groups Naveed Janjua, Rafal Kustra Hepatology
Evaluation of a preoperative personalized risk communication tool: a prospective before-and-after study Doug Manuel Canadian Journal of Anesthesia
An Empiricist’s Guide to Using Ecological Theory Sarah Otto American Naturalist
Should age-dependent absolute risk thresholds be used for risk stratification in risk-stratified breast cancer screening? Michael Wolfson Journal of Personalized Medicine
Women in the 2019 hepatitis C cascade of care: findings from the British Columbia Hepatitis Testers cohort study Naveed Janjua BMC Women's Health
Predicting insect outbreaks using machine learning: A mountain pine beetle case study Mark Lewis Ecology and Evolution
Myxobolus cerebralis establishment and spread: a graphical synthesis Mark Lewis Canadian Journal of Fisheries and Aquatic Sciences
Anal human papillomavirus prevalence and risk factors among men who have sex with men in Vietnam Marc Brisson International Journal of Infectious Diseases
Dataset of COVID-19 outbreak and potential predictive features in the USA Mark Lewis Data in Brief
Machine learning for identification of frailty in Canadian primary care practices Tyler Williamson International Journal of Population Data Science
Linkage of Emergency Medical Services and Hospital Data: A Necessary Precursor to Improve Understanding of Outcomes of Prehospital Care Tyler Williamson Prehospital Emergency Care
Optimal shutdown strategies for COVID-19 with economic and mortality costs: British Columbia as a case study Rebecca Tyson Royal Society Open Science
Assessing the electronic evidence system needs of canadian public health professionals: Cross-sectional study David Buckeridge JMIR Public Health and Surveillance
Towards Building a Sustainable Future: Positioning Ecological Modelling for Impact in Ecosystems Management Rebecca Tyson Bulletin of Mathematical Biology
Modelling the introduction and transmission of Campylobacter in a North American chicken flock Amy Greer Zoonoses and Public Health
Musculoskeletal injuries in Standardbred racehorses on Prince Edward Island Javier Sanchez The Canadian veterinary journal = La revue veterinaire canadienne
Impact of temperature on the affinity of SARS-CoV-2 Spike glycoprotein for host ACE2 Sandrine Moreira Journal of Biological Chemistry
Erratum: Functional diversity: An epistemic roadmap (BioScience DOI: 10.1093/biosci/biz089) Jesse Shapiro BioScience
Trends in Interregional Travel to Shopping Malls and Restaurants before and after Differential COVID-19 Restrictions in the Greater Toronto Area Shelby Sturrock JAMA Network Open
Endurance Limited Lines of Approach for a Sprinting Submarine Matthew MacLeod Military Operations Research (United States)
Cefazolin versus cloxacillin as definitive antibiotic therapy for methicillin-susceptible Staphylococcus aureus spinal epidural abscess: a retrospective cohort study Mark Loeb International Journal of Antimicrobial Agents
Evolution and emergence of multidrug-resistant mycobacterium tuberculosis in chisinau, moldova Caroline Colijn Microbial Genomics
Monitoring non-pharmaceutical public health interventions during the COVID-19 pandemic David Buckeridge Scientific Data
A Population-Based Analysis of Long-Term Outcomes Among Older Adults Requiring Unexpected Intensive Care Unit Admission After Cancer Surgery Doug Manuel Annals of Surgical Oncology
A combination of metagenomic and cultivation approaches reveals hypermutator phenotypes within vibrio cholerae- infected patients Jesse Shapiro mSystems
Generating community measures of food purchasing activities using store-level electronic grocery transaction records: An ecological study in Montreal, Canada David Buckeridge Public Health Nutrition
Exploring the reasons for low pertussis vaccine effectiveness in Ontario, Canada, 2006–2008: a Canadian Immunization Research Network study Larry Svenson Canadian Journal of Public Health
SARS-COV-2 shedding dynamics across the respiratory tract, sex, and disease severity for adult and pediatric COVID-19 David Fisman eLife
Zika virus outbreak in Brazil under current and future climate Amy Greer Epidemics
Effectiveness of BNT162b2 and mRNA-1273 covid-19 vaccines against symptomatic SARS-CoV-2 infection and severe covid-19 outcomes in Ontario, Canada: Test negative design study Naveed Janjua, Larry Svenson The BMJ
Physical, sexual and psychological intimate partner violence and non-partner sexual violence against women and girls: A systematic review protocol for producing global, regional and country estimates Mathieu Maheu-Giroux BMJ Open
Genome Evolution in Bacteria Isolated from Million-Year-Old Subseafloor Sediment Jesse Shapiro mBio
Development of a case definition for hearing loss in community-based older adults: a cross-sectional validation study Tyler Williamson CMAJ open
Exploring the dynamics of workplace typologies for sex workers in Eastern Ukraine Sharmistha Mishra Global Public Health
COVID-19 Case Age Distribution: Correction for Differential Testing by Age David Fisman, Amy Greer, Ashleigh Tuite Annals of Internal Medicine
Individual and social determinants of SARS-CoV-2 testing and positivity in Ontario, Canada: A population-wide study Rafal Kustra, Sharmistha Mishra CMAJ
Fraïssé Limits for Relational Metric Structures Paul Tupper Journal of Symbolic Logic
Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures Jesse Shapiro Genome Biology and Evolution
Sleeping for two: study protocol for a randomized controlled trial of cognitive behavioral therapy for insomnia in pregnant women Tyler Williamson Trials
Influence of maternal excess weight before pregnancy on breastfeeding and weaning: Pooled analyses of four population-based cohorts born between 1982-2015 Diego Bassani British Journal of Nutrition
Immediate and Long-Term Health Care Support Needs of Older Adults Undergoing Cancer Surgery: A Population-Based Analysis of Postoperative Homecare Utilization Doug Manuel Annals of Surgical Oncology
Co-inoculation with arbuscular mycorrhizal fungi differing in carbon sink strength induces a synergistic effect in plant growth Rebecca Tyson Journal of Theoretical Biology
Improving health equity and ending the HIV epidemic in the USA: a distributional cost-effectiveness analysis in six cities Caroline Colijn The Lancet HIV
A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities Jesse Shapiro ISME Journal
A biomarker-guided, prospective, phase 2 trial of pre-emptive graft-versus-host disease therapy using anti-thymocyte globulin Tyler Williamson Cytotherapy
Error estimation and uncertainty quantification for first time to a threshold value Donald Estep BIT Numerical Mathematics
Vitamin D status among first-generation immigrants from different ethnic groups and origins: An observational study using the Canadian health measures survey Doug Manuel Nutrients
Association Between Health System Factors and Utilization of Routine Laboratory Tests in Clinical Teaching Units: a Cohort Analysis Tyler Williamson Journal of General Internal Medicine
Population coverage of the canadian chronic disease surveillance system: A survey of the contents of health insurance registries across Canada Larry Svenson Health Promotion and Chronic Disease Prevention in Canada
Does Counting Different Life Stages Impact Estimates for Extinction Probabilities for Tsetse (Glossina spp)? Jonathan Dushoff Bulletin of Mathematical Biology
Understanding why superspreading drives the COVID-19 pandemic but not the H1N1 pandemic David Fisman The Lancet Infectious Diseases
Smart about Meds (SAM): A pilot randomized controlled trial of a mobile application to improve medication adherence following hospital discharge David Buckeridge JAMIA Open
On inferring evolutionary stability in finite populations using infinite population models David Earn Journal of Mathematical Biology
Computationally simple anisotropic lattice covariograms Mark Lewis Environmental and Ecological Statistics
Supervised multi-specialist topic model with applications on large-scale electronic health record data David Buckeridge Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021
Consideration of antimicrobial resistance and contextual factors in infectious disease guidelines: A systematic survey Mark Loeb BMJ Open
Characterization of the microbiota and resistome of bulk tank milk samples from Prince Edward Island dairy farms Javier Sanchez Journal of Dairy Science
Gut health' and the microbiome in the popular press: A content analysis Timothy Caulfield BMJ Open
Beaver fever: Whole-genome characterization of waterborne outbreak and sporadic isolates to study the zoonotic transmission of giardiasis Cedric Chauve, Natalie Prystajecky mSphere
Pandemic paradox: Early life H2N2 pandemic influenza infection enhanced susceptibility to death during the 2009 H1N1 pandemic David Earn mBio
Using genetic distance from archived samples for the prediction of antibiotic resistance in Escherichia coli David Fisman Antimicrobial Agents and Chemotherapy
Novel Antibiotics May Be Noninferior but Are They Becoming Less Effective?: a Systematic Review Mark Loeb Antimicrobial Agents and Chemotherapy
Comparison of antibiotics included in national essential medicines lists of 138 countries using the WHO Access, Watch, Reserve (AWaRe) classification: a cross-sectional study Mark Loeb The Lancet Infectious Diseases
Draft genome sequence of azole-resistant aspergillus thermomutatus (neosartorya pseudofischeri) strain hmr-af-39, isolated from a human nasal septum abscess aspirate Sandrine Moreira Microbiology Resource Announcements
Draft genome sequences of azole-resistant and azole-susceptible aspergillus turcosus clinical isolates recovered from bronchoalveolar lavage fluid samples Sandrine Moreira Microbiology Resource Announcements
Stress by heat shock induces massive down regulation of genes and allows differential allelic expression of the Gal/GalNAc lectin in Entamoeba histolytica Sandrine Moreira Eukaryotic Cell
Characterization of Legionella species from watersheds in British Columbia, Canada Natalie Prystajecky mSphere
Pooled nucleic acid amplification test for screening of stool specimens for shiga toxin-producing Escherichia coli Natalie Prystajecky Journal of Clinical Microbiology
Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment Jesse Shapiro Molecular Ecology
Parasitism within mutualist guilds explains the maintenance of diversity in multi-species mutualisms Rebecca Tyson Theoretical Ecology
Guest Editorial Explainable AI: Towards Fairness, Accountability, Transparency and Trust in Healthcare David Buckeridge IEEE Journal of Biomedical and Health Informatics
Risk-stratified approach to breast cancer screening in canada: Women’s knowledge of the legislative context and concerns about discrimination from genetic and other predictive health data Michael Wolfson Journal of Personalized Medicine
Increasing concentration of COVID-19 by socioeconomic determinants and geography in Toronto, Canada: an observational study Rafal Kustra, Mathieu Maheu-Giroux, Sharmistha Mishra, Tyler Williamson Annals of Epidemiology
A disproportionate epidemic: COVID-19 cases and deaths among essential workers in Toronto, Canada Rafal Kustra, Sharmistha Mishra Annals of Epidemiology
Widespread agrochemicals differentially affect zooplankton biomass and community structure Jesse Shapiro Ecological Applications
Demystifying individual heterogeneity Troy Day Ecology Letters
Identifying the environmental drivers of Campylobacter infection risk in southern Ontario, Canada using a One Health approachs David Fisman Zoonoses and Public Health
Supernova Model Discrimination with Hyper-Kamiokande Dean Karlen, Dean Karlen Astrophysical Journal
Comorbidities and medical complications in hospitalized subarachnoid hemorrhage patients David Buckeridge Canadian Journal of Neurological Sciences
The impact of lockdown timing on COVID-19 transmission across US counties Xuekui Zhang eClinicalMedicine
Inferring population HIV incidence trends from surveillance data of recent HIV infection among HIV testing clients Mathieu Maheu-Giroux AIDS (London, England)
The Canadian Health Clock and health calculators Doug Manuel Canadian Journal of Public Health
Decision support for optimal use of joint training funds in the Canadian armed forces Matthew MacLeod Research Anthology on Military and Defense Applications, Utilization, Education, and Ethic
Risk of COVID-19 variant importation – How useful are travel control measures? Julien Arino Infectious Disease Modelling
Metagenomic study to evaluate functional capacity of a cyanobacterial bloom during oxidation Jesse Shapiro Chemical Engineering Journal Advances
Learning and Animal Movement Mark Lewis Frontiers in Ecology and Evolution
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission Caroline Colijn, Paul Tupper PLoS Computational Biology
Optimising nurse schedules at a community health centre Alexander Rutherford Operations Research for Health Care
Optimal human papillomavirus vaccination strategies to prevent cervical cancer in low-income and middle-income countries in the context of limited resources: a mathematical modelling analysis Marc Brisson The Lancet Infectious Diseases
Climate and outbreaks of the forest tent caterpillar Colin Daniel Ecography
Retailer Compliance as a Predictor of Youth Smoking Participant and Consumption Alan Diener Journal of School Health
Evolutionary potential for genomic islands of sexual divergence on recombining sex chromosomes Sarah Otto New Phytologist
Associations of acetaminophen use during pregnancy and the first year of life with neurodevelopment in early childhood Diego Bassani Paediatric and Perinatal Epidemiology
Virulence evolution and the trade-off hypothesis: History, current state of affairs and the future Amy Hurford Journal of Evolutionary Biology
Risk Perception and Human Health Risk in Rural Communities Consuming Unregulated Well Water in Saskatchewan, Canada Javier Sanchez Risk Analysis
STOCK MARKET OPENNESS AND MARKET QUALITY: EVIDENCE FROM THE SHANGHAI–HONG KONG STOCK CONNECT PROGRAM Xuekui Zhang Journal of Financial Research
PICS: Probabilistic Inference for ChIP-seq Xuekui Zhang Biometrics
I can see clearly now: Reinterpreting statistical significance Benjamin Bolker, Jonathan Dushoff Methods in Ecology and Evolution
Integrating continuous stocks and flows into state-and-transition simulation models of landscape change Colin Daniel Methods in Ecology and Evolution
State-and-transition simulation models: a framework for forecasting landscape change Colin Daniel Methods in Ecology and Evolution
Exploration of efficient reduced-order modeling and a posteriori error estimation Donald Estep International Journal for Numerical Methods in Engineering
Predicting death in home care users: Derivation and validation of the Risk Evaluation for Support: Predictions for Elder-Life in the Community Tool (RESPECT) Doug Manuel CMAJ
The burden of hand, foot, and mouth disease among children under different vaccination scenarios in China: a dynamic modelling study Sharmistha Mishra BMC Infectious Diseases
Transformation of Diplonema papillatum, the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa) Sandrine Moreira Environmental Microbiology
National contributions to global ecosystem values Sarah Otto Conservation Biology
The evolution of realized niches within freshwater Synechococcus Jesse Shapiro Environmental Microbiology
Reuniting ecology and evolution Jesse Shapiro Environmental Microbiology Reports
Guided undersampling classification for automated radiation therapy quality assurance of prostate cancer treatment Dionne Aleman Medical Physics
Dynamics, Persistence, and Genetic Management of the Endangered Florida Panther Population Benjamin Bolker Wildlife Monographs
Using local ecological knowledge as evidence to guide management: A community-led harvest calculator for muskoxen in Greenland Colin Daniel Conservation Science and Practice
Why is sterility virulence most common in sexually transmitted infections? Examining the role of epidemiology Troy Day Evolution
The industrialization of farming may be driving virulence evolution Troy Day Evolutionary Applications
Predictors of influenza a molecular viral shedding in Hutterite communities David Earn Influenza and other Respiratory Viruses
Immune Evasion And The Evolution Of Molecular Mimicry In Parasites Amy Hurford Evolution
Medical masks vs N95 respirators for preventing COVID-19 in healthcare workers: A systematic review and meta-analysis of randomized trials Mark Loeb Influenza and other Respiratory Viruses
Bayesian statistical models to estimate EQ-5D utility scores from EORTC QLQ data in myeloma Christopher McCabe Pharmaceutical Statistics
Unscrambling genetic information at the RNA level Sandrine Moreira Wiley Interdisciplinary Reviews: RNA
Insights from Fisher's geometric model on the likelihood of speciation under different histories of environmental change Sarah Otto Evolution
Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere Sarah Otto Evolutionary Applications
Phonological regularity, perceptual biases, and the role of phonotactics in speech error analysis Paul Tupper Wiley Interdisciplinary Reviews: Cognitive Science
Moving forward in circles: challenges and opportunities in modelling population cycles Rebecca Tyson Ecology Letters
Modelling the combined impact of interventions in averting deaths during a synthetic-opioid overdose epidemic Daniel Coombs Addiction
Somatic mutations substantially increase the per-generation mutation rate in the conifer Picea sitchensis Sarah Otto Evolution Letters
Statistical modeling of patterns in annual reproductive rates Benjamin Bolker Ecology
The impact of providing personalized depression risk information on self-help and help-seeking behaviors: Results from a mixed methods randomized controlled trial Doug Manuel Depression and Anxiety
Addressing inequities in care on the path to eliminating hepatitis C in BC Naveed Janjua British Columbia Medical Journal
Estimating the epidemic consequences of HIV prevention gaps among key populations Sharmistha Mishra Journal of the International AIDS Society
Physical comorbidities increase the risk of psychiatric comorbidity in multiple sclerosis Larry Svenson Brain and Behavior
A Call for Caution in Use of Pertussis Vaccine Effectiveness Studies to Estimate Waning Immunity: A Canadian Immunization Research Network Study Larry Svenson Clinical Infectious Diseases
Effects of Reductions in Body Mass Index on the Future Osteoarthritis Burden in Canada: A Population-Based Microsimulation Study Michael Wolfson Arthritis Care and Research
Understanding Rabies Persistence in Low-Density Fox Populations Amy Hurford Ecoscience
Can hepatitis C elimination targets be sustained among people who inject drugs post-2030? Mathieu Maheu-Giroux International Journal of Drug Policy
Patient perspectives on the implementation of routinised syphilis screening with HIV viral load testing: Qualitative process evaluation of the Enhanced Syphilis Screening Among HIV-positive Men trial Sharmistha Mishra BMC Health Services Research
Recommendations of the 5th Canadian Consensus Conference on the diagnosis and treatment of dementia Jean-Paul Soucy Alzheimer's and Dementia
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The impact of varicella vaccination on paediatric herpes zoster epidemiology: a Canadian population-based retrospective cohort study Larry Svenson European Journal of Clinical Microbiology and Infectious Diseases
Impact of direct-acting antivirals for HCV on mortality in a large population-based cohort study Naveed Janjua Journal of Hepatology
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Development and validation of a predictive algorithm for risk of dementia in the community setting Doug Manuel Journal of Epidemiology and Community Health
Price discounting as a hidden risk factor of energy drink consumption David Buckeridge Canadian Journal of Public Health
cchsflow: an open science approach to transform and combine population health surveys Doug Manuel Canadian Journal of Public Health
COVID-19 infection among international travellers: A prospective analysis Larry Svenson BMJ Open
Corrigendum to “Quantitative meta-analysis of maternal prenatal salivary cortisol and newborn birthweight does not identify effect of fetal sex” [Psychoneuroendocrinology 106 (2019) 117–121](S0306453019301295)(10.1016/j.psyneuen.2019.03.036) Tyler Williamson Psychoneuroendocrinology
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Involuntary isolation: Interpreting mental health legislation during the COVID-19 pandemic David Fisman British Journal of Psychiatry
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Global seroprevalence of SARS-CoV-2 antibodies: A systematic review and metaanalysis Tyler Williamson PLoS ONE
short communication: Sensitivity analysis of an integrated climate-economic model Benjamin Bolker SIAM Journal on Financial Mathematics
Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads Daniel Coombs PLoS Computational Biology
Smart about medications (SAM): A digital solution to enhance medication management following hospital discharge David Buckeridge JAMIA Open
A Net Benefit Approach for the Optimal Allocation of a COVID-19 Vaccine Kate Harback, Christopher McCabe, Jeff Round PharmacoEconomics
Modelling the impact of travel restrictions on COVID-19 cases in Newfoundland and Labrador Amy Hurford Royal Society Open Science
High-resolution human mobility data reveal race and wealth disparities in disaster evacuation patterns Sean Cornelius Humanities and Social Sciences Communications
Comparing Blanket vs. Selective Dry Cow Treatment Approaches for Elimination and Prevention of Intramammary Infections During the Dry Period: A Systematic Review and Meta-Analysis Javier Sanchez Frontiers in Veterinary Science
The mobility gap: Estimating mobility thresholds required to control SARS-CoV-2 in Canada Shelby Sturrock CMAJ
The uneven impacts of avoiding public transit on riders’ access to healthcare during COVID-19 Shelby Sturrock Journal of Transport and Health
COVID-19 treatment combinations and associations with mortality in a large multi-site healthcare system Michael WZ Li PLoS ONE
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Impact of HCV infection and ethnicity on incident type 2 diabetes: Findings from a large population-based cohort in British Columbia Naveed Janjua BMJ Open Diabetes Research and Care
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Personalized risk assessment for prevention and early detection of breast cancer: Integration and implementation (PERSPECTIVE I&amp;I) Michael Wolfson Journal of Personalized Medicine
Diagnostic testing patterns for Streptococcus equi subsp. Equi in Ontario horses during the years 2008 to 2018 Amy Greer Canadian Veterinary Journal
Human papillomavirus (HPV) vaccine uptake among a community-recruited sample of gay, bisexual, and other men who have sex with men in the three largest cities in Canada from 2017 to 2019 Marc Brisson Vaccine
Under-Reporting of Known HIV-Positive Status Among People Living with HIV: A Systematic Review and Meta-analysis Mathieu Maheu-Giroux AIDS and Behavior
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A taxonomy of risk-associated alternative health practices: A Delphi study Timothy Caulfield Health and Social Care in the Community
Transient disease dynamics across ecological scales David Earn Theoretical Ecology
ISSCR Guidelines for Stem Cell Research and Clinical Translation: The 2021 update Jeff Round Stem Cell Reports
Self-help behaviors partially mediate the relationship between personalized depression risk disclosure and psychological distress: A mediation analysis using data from a randomized controlled trial Doug Manuel Journal of Psychiatric Research
Evolution of plasticity in production and transgenerational inheritance of small RNAs under dynamic environmental conditions Sarah Otto PLoS Genetics
The effect of average temperature on suicide rates in five urban California counties, 1999–⁠2019: an ecological time series analysis David Fisman BMC Public Health
Costs and Scale-Up Costs of Integrating HIV Self-Testing Into Civil Society Organisation-Led Programmes for Key Populations in Côte d'Ivoire, Senegal, and Mali Mathieu Maheu-Giroux Frontiers in Public Health
Use of HIV pre-exposure prophylaxis among urban Canadian gay, bisexual and other men who have sex with men: a cross-sectional analysis of the Engage cohort study Mathieu Maheu-Giroux CMAJ open
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Challenges of HIV Self-Test Distribution for Index Testing When HIV Status Disclosure Is Low: Preliminary Results of a Qualitative Study in Bamako (Mali) as Part of the ATLAS Project Mathieu Maheu-Giroux Frontiers in Public Health
Applied stretch initiates directional invasion through the action of Rap1 GTPase as a tension sensor Daniel Coombs Journal of Cell Science
In vivo regulation of integrin turnover by outside-in activation Daniel Coombs Journal of Cell Science
Places of death and places of care for Indigenous Peoples in Ontario: a retrospective cohort study Doug Manuel Canadian Journal of Public Health
Tools for measuring gender equality and women’s empowerment (GEWE) indicators in humanitarian settings Diego Bassani Conflict and Health
Canadian rheumatology association recommendation for the use of COVID-19 vaccination for patients with autoimmune rheumatic diseases Mark Loeb Journal of Rheumatology
Recurrent Traumatic Brain Injury Surveillance Using Administrative Health Data: A Bayesian Latent Class Analysis David Buckeridge Frontiers in Neurology
Modeling COVID-19 and Its Impacts on U.S. Immigration and Customs Enforcement (ICE) Detention Facilities, 2020 Daniel Coombs Journal of Urban Health
Progressive multifocal leukoencephalopathy and Creutzfeldt-Jakob disease: population-wide incidences, comorbidities, costs of care, and outcomes Larry Svenson Journal of NeuroVirology
A robust and efficient algorithm to find profile likelihood confidence intervals Mark Lewis Statistics and Computing
Genetic paths to evolutionary rescue and the distribution of fitness effects along them Sarah Otto Genetics
Direct health system costs for systemic lupus erythematosus patients in Alberta, Canada Larry Svenson PLoS ONE
Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination Rates and Nonpharmaceutical Intervention Scenarios — United States, April–September 2021 Dean Karlen, Dean Karlen MMWR Recommendations and Reports
The association of estimated cardiorespiratory fitness with COVID-19 incidence and mortality: A cohort study Shelby Sturrock PLoS ONE
The Signature of Endemic Populations in the Spread of Mountain Pine Beetle Outbreaks Mark Lewis Bulletin of Mathematical Biology
Estimating Genetic Similarity Matrices Using Phylogenies Caroline Colijn Journal of Computational Biology
Modelling the impact of household size distribution on the transmission dynamics of COVID-19 Caroline Colijn Journal of the Royal Society Interface
A posteriori error analysis for Schwarz overlapping domain decomposition methods Donald Estep BIT Numerical Mathematics
Individual and social determinants of sars-cov-2 testing and positivity in ontario, canada: A population-wide study Rafal Kustra, Sharmistha Mishra CMAJ
Socio-demographic disparities in knowledge, practices, and ability to comply with COVID-19 public health measures in Canada David Fisman, Amy Greer, Ashleigh Tuite Canadian Journal of Public Health
Validating viral hepatitis B and C diagnosis codes: a retrospective analysis using Ontario’s health administrative data Rafal Kustra Canadian Journal of Public Health
Prophylaxis against covid-19: Living systematic review and network meta-analysis Mark Loeb The BMJ
Peddling promise? An analysis of private umbilical cord blood banking company websites in Canada Timothy Caulfield Cell and Tissue Banking
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes Caroline Wagner Science
Yellow fever virus outbreak in Brazil under current and future climate Amy Greer Infectious Disease Modelling
Measurements of and + charged-current cross-sections without detected pions or protons on water and hydrocarbon at a mean anti-neutrino energy of 0.86 GeV Dean Karlen, Dean Karlen Progress of Theoretical and Experimental Physics
The impact of age demographics on interpreting and applying population-wide infection fatality rates for COVID-19 Matthew MacLeod Interfaces
Implementing Implementation Research: Teaching Implementation Research to HIV Researchers Sharmistha Mishra Current HIV/AIDS Reports
Intention-to-treat analysis may be more conservative than per protocol analysis in antibiotic non-inferiority trials: a systematic review Mark Loeb BMC Medical Research Methodology
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Ten scientific reasons in support of airborne transmission of SARS-CoV-2 David Fisman The Lancet
Has public health messaging during the COVID-19 pandemic reflected local risks to health?: A content analysis of tweeting practices across Canadian geographies Shelby Sturrock Health and Place
Cohort profile: Development and characteristics of a retrospective cohort of individuals dispensed prescription opioids for non-cancer pain in British Columbia, Canada Naveed Janjua BMJ Open
Age-dependence of healthcare interventions for COVID-19 in Ontario, Canada Benjamin Bolker, Jonathan Dushoff BMC Public Health
The virus evolves: Four public health priorities for reducing the evolutionary potential of SARS-CoV-2 Sarah Otto BioScience
Software benchmark—classification tree algorithms for cell atlases annotation using single-cell rna-sequencing data Xuekui Zhang Microbiology Research
The mobility gap: Estimating mobility thresholds required to control SARS-CoV-2 in Canada Shelby Sturrock CMAJ
Adjoint sensitivity analysis for uncertain material parameters in frequency-domain 3-d fem Donald Estep IEEE Transactions on Antennas and Propagation
Personalizing Breast Cancer Screening Based on Polygenic Risk and Family History Michael Wolfson Journal of the National Cancer Institute
Joint testing of IgM and IgG has high value for ruling in SARS-CoV-2 infection Mark Loeb Annals of Internal Medicine
A qualitative model of the HIV care continuum in Vancouver, Canada Alexander Rutherford Health Systems
The contrasting role of nasopharyngeal angiotensin converting enzyme 2 (ACE2) transcription in SARS-CoV-2 infection: A cross-sectional study of people tested for COVID-19 in British Columbia, Canada Natalie Prystajecky EBioMedicine
Visit-to-visit blood pressure variability is common in primary care patients: Retrospective cohort study of 221,803 adults Tyler Williamson PLoS ONE
Elevated rates of horizontal gene transfer in the industrialized human microbiome Jesse Shapiro Cell
Vitamin D supplementation to prevent acute respiratory infections: a systematic review and meta-analysis of aggregate data from randomised controlled trials Mark Loeb The Lancet Diabetes and Endocrinology
Simulation-Based Estimation of SARS-CoV-2 Infections Associated with School Closures and Community-Based Nonpharmaceutical Interventions in Ontario, Canada Sharmistha Mishra JAMA Network Open
Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota Jesse Shapiro Gut Microbes
Maternal perinatal depression and infant sleep problems at 1 year of age: Subjective and actigraphy data from a population-based birth cohort study Diego Bassani Journal of Sleep Research
Let’s do better: public representations of COVID-19 science Timothy Caulfield Facets
The effect of seasonal respiratory virus transmission on syndromic surveillance for COVID-19 in Ontario, Canada David Fisman, Ashleigh Tuite The Lancet Infectious Diseases
Evaluating the Integration of One Health in Surveillance Systems for Antimicrobial Use and Resistance: A Conceptual Framework David Buckeridge Frontiers in Veterinary Science
Speed and strength of an epidemic intervention Jonathan Dushoff Proceedings of the Royal Society B: Biological Sciences
Differences in risk factors for hepatitis B, hepatitis C, and human immunodeficiency virus infection by ethnicity: A large population-based cohort study in British Columbia, Canada Naveed Janjua International Journal of Infectious Diseases
Aging and interferons: Impacts on inflammation and viral disease outcomes Mark Loeb Cells
Hospital costs of Canadian cystic fibrosis patients Tyler Williamson Canadian Journal of Respiratory, Critical Care, and Sleep Medicine
Recommendation mapping of the World Health Organization's guidelines on tuberculosis: A new approach to digitizing and presenting recommendations Mark Loeb Journal of Clinical Epidemiology
How much leeway is there to relax COVID-19 control measures? Caroline Colijn, Daniel Coombs, Naveed Janjua Epidemics
Compelled Disclosure of Confidential Information in Patient Safety Research Timothy Caulfield Journal of patient safety
Decentralizing PrEP delivery: Implementation and dissemination strategies to increase PrEP uptake among MSM in Toronto, Canada Sharmistha Mishra PLoS ONE
Strengthening the culture of public health surveillance and population health monitoring David Buckeridge Revue Medicale Suisse
Staying Ahead of the Epidemiologic Curve: Evaluation of the British Columbia Asthma Prediction System (BCAPS) During the Unprecedented 2018 Wildfire Season David Buckeridge Frontiers in Public Health
A novel preference-informed complementary trial (PICT) design for clinical trial research influenced by strong patient preferences Christopher McCabe, Jeff Round Trials
Selective Interference and the Evolution of Sex Sarah Otto The Journal of heredity
A dynamic neural gradient model of two-item and intermediate transposition Paul Tupper Neural Computation
Examining tweet content and engagement of canadian public health agencies and decision makers during COVID-19: Mixed methods analysis Shelby Sturrock Journal of Medical Internet Research
Increased Surgical Capacity without Additional Resources: Generalized Operating Room Planning and Scheduling Dionne Aleman Production and Operations Management
Bayesian latent multi-state modeling for nonequidistant longitudinal electronic health records David Buckeridge Biometrics
Importance of COVID-19 vaccine efficacy in older age groups Caroline Colijn, Daniel Coombs Vaccine
Short-Course Antimicrobial Therapy for Pediatric Community-Acquired Pneumonia: The SAFER Randomized Clinical Trial Mark Loeb JAMA Pediatrics
Within-host model of respiratory virus shedding and antibody response to H9N2 avian influenza virus vaccination and infection in chickens Amy Greer Infectious Disease Modelling
Effect of Correcting the Postnatal Age of Preterm-Born Children on Measures of Associations between Infant Length-for-Age z Scores and Mid-Childhood Outcomes Diego Bassani American Journal of Epidemiology
Comparison of approaches to quantify SARS-CoV-2 in wastewater using RT-qPCR: Results and implications from a collaborative inter-laboratory study in Canada Natalie Prystajecky Journal of Environmental Sciences (China)
Viral hepatitis C cascade of care: A population-level comparison of immigrant and long-term residents Naveed Janjua, Rafal Kustra Liver International
Assessing the Potential Impact of Disruptions Due to COVID-19 on HIV Among Key and Lower-Risk Populations in the Largest Cities of Cameroon and Benin Mathieu Maheu-Giroux, Sharmistha Mishra Journal of acquired immune deficiency syndromes (1999)
Trends in knowledge of HIV status and efficiency of HIV testing services in sub-Saharan Africa, 2000–20: a modelling study using survey and HIV testing programme data Mathieu Maheu-Giroux The Lancet HIV
A commentary on the value of hospital data for covid-19 pandemic surveillance and planning Doug Manuel International Journal of Population Data Science
Cohort profile: St. Michael's Hospital Tuberculosis Database (SMH-TB), a retrospective cohort of electronic health record data and variables extracted using natural language processing Sharmistha Mishra PLoS ONE
The relationship between the global burden of influenza from 2017 to 2019 and COVID-19: Descriptive epidemiological assessment Sharmistha Mishra JMIR Public Health and Surveillance
The impact of public coverage of newer hepatitis C medications on utilization, adherence, and costs in British Columbia Naveed Janjua PLoS ONE
A novel development indicator based on population-average height trajectories of children aged 0-5 years modelled using 145 surveys in 64 countries, 2000-2018 Diego Bassani BMJ Global Health
Parametric models for combined failure time data from an incident cohort study and a prevalent cohort study with follow-up David Buckeridge International Journal of Biostatistics
The equity and effectiveness of achieving Canada’s voluntary sodium reduction guidance targets: A modelling study using the 2015 canadian community health survey—nutrition Doug Manuel Nutrients
Constant Distortion Embeddings of Symmetric Diversities Paul Tupper Analysis and Geometry in Metric Spaces
Population Level-Impact and Herd Effects Following the Introduction of Human Papillomavirus Vaccination Programmes: Updated Systematic Review and Meta-analysis Marc Brisson Obstetrical and Gynecological Survey
Point-of-sale cigarette pricing strategies and young adult smokers' intention to purchase cigarettes: An online experiment Nathaniel Osgood Tobacco Control
COVID-19 in Solid Organ Transplantation: Disease Severity and Clinical Update Michael WZ Li Transplantation Proceedings
TRY plant trait database – enhanced coverage and open access Sarah Otto Global Change Biology
The impact of porcine reproductive and respiratory syndrome virus (PRRSV) genotypes, established on the basis of ORF-5 nucleotide sequences, on three production parameters in Ontario sow farms Amy Greer Preventive Veterinary Medicine
Aligning population models with data: Adaptive management for big game harvests Mark Lewis Global Ecology and Conservation
The OncoSim model: Development and use for better decision-making in Canadian cancer control Michael Wolfson Current Oncology
Implementing low-dose computed tomography screening for lung cancer in Canada: Implications of alternative at-risk populations, screening frequency, and duration Michael Wolfson Current Oncology
Using the cancer risk management model to evaluate the health and economic impacts of cytology compared with human papillomavirus DNA testing for primary cervical cancer screening in Canada Michael Wolfson Current Oncology
Using the cancer risk management model to evaluate colorectal cancer screening options for Canada Michael Wolfson Current Oncology
Concurrent prescriptions for opioids and benzodiazepines and risk of opioid overdose: Protocol for a retrospective cohort study using linked administrative data David Buckeridge BMJ Open
Crowdfunding Campaigns and COVID-19 Misinformation Timothy Caulfield American journal of public health
Logic-Based Benders Decomposition and Binary Decision Diagram Based Approaches for Stochastic Distributed Operating Room Scheduling Dionne Aleman INFORMS Journal on Computing
A conceptual guide to measuring species diversity Jonathan Dushoff Oikos
Disseminated cryptococcal infection in a patient with a remote renal transplant Sharmistha Mishra CMAJ
Posterior Segment Ophthalmic Manifestations in Ebola Survivors, Sierra Leone Sharmistha Mishra Ophthalmology
Agent-Based Modeling: A Method for Investigating Challenging Research Problems Nathaniel Osgood Nursing research
Mathematical modelling of the influence of serosorting on the population-level HIV transmission impact of pre-exposure prophylaxis Sharmistha Mishra AIDS (London, England)
Predicting Vibrio cholerae Infection and Disease Severity Using Metagenomics in a Prospective Cohort Study Jesse Shapiro Journal of Infectious Diseases
A data quality assessment to inform hypertension surveillance using primary care electronic medical record data from Alberta, Canada Tyler Williamson BMC Public Health
Women’s views on multifactorial breast cancer risk assessment and risk-stratified screening: A population-based survey from four Provinces in Canada Michael Wolfson Journal of Personalized Medicine
Modifying NICE’s Approach to Equity Weighting Christopher McCabe PharmacoEconomics
Determinants of Influenza Mortality Trends: Age-Period-Cohort Analysis of Influenza Mortality in the United States, 1959–2016 David Earn Demography
Surviving Sepsis Campaign Guidelines on the Management of Adults with Coronavirus Disease 2019 (COVID-19) in the ICU: First Update Mark Loeb Critical Care Medicine
Estimating the health impact of vaccination against ten pathogens in 98 low-income and middle-income countries from 2000 to 2030: a modelling study Marc Brisson The Lancet
Measures of Adiposity and Risk of Testing Positive for SARS-CoV-2 in the UK Biobank Study Shelby Sturrock Journal of Obesity
Estimated Prevalence and Incidence of Disease-Associated Human Papillomavirus Types Among 15- to 59-Year-Olds in the United States Marc Brisson Sexually transmitted diseases
The Estimated Direct Lifetime Medical Costs of Sexually Transmitted Infections Acquired in the United States in 2018 Marc Brisson Sexually transmitted diseases
The Estimated Lifetime Medical Cost of Diseases Attributable to Human Papillomavirus Infections Acquired in 2018 Marc Brisson Sexually transmitted diseases
Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 h before COVID-19 clinical tests and 96 h before hospitalizations Doug Manuel Science of the Total Environment
Describing, analysing and understanding the effects of the introduction of HIV self-testing in West Africa through the ATLAS programme in Côte d’Ivoire, Mali and Senegal Mathieu Maheu-Giroux BMC Public Health
Managing aquatic invasions: Optimal locations and operating times for watercraft inspection stations Mark Lewis Journal of Environmental Management
NICE’s Discounting Review: Clear Thinking on Rational Revision Meets Obstacle of Industrial Interests Christopher McCabe PharmacoEconomics
Feedback between coevolution and epidemiology can help or hinder the maintenance of genetic variation in host-parasite models Sarah Otto Evolution
Evaluation of an OPEN Stewardship generated feedback intervention to improve antibiotic prescribing among primary care veterinarians in Ontario, Canada and Israel: Protocol for evaluating usability and an interrupted time-series analysis David Fisman, Amy Greer BMJ Open
The optimal design of clinical trials with potential biomarker effects: A novel computational approach Xuekui Zhang Statistics in Medicine
Heterogeneous Hunter-Gatherer and Steppe-Related Ancestries in Late Neolithic and Bell Beaker Genomes from Present-Day France Jesse Shapiro Current Biology
Continued HPV vaccination in the face of unexpected challenges: A commentary on the rationale for an extended interval two-dose schedule Marc Brisson Vaccine
Evaluation of an automated feedback intervention to improve antimicrobial prescribing among primary care physicians (OPEN Stewardship): protocol for an interrupted time-series and usability analysis in Ontario, Canada and Southern Israel David Fisman BMJ open
Quality and Safety in Long-Term Care in Ontario: The Impact of Language Discordance Doug Manuel Journal of the American Medical Directors Association
Working in a bubble: How can businesses reopen while limiting the risk of COVID-19 outbreaks? Troy Day, David Fisman, Tyler Williamson CMAJ
Validating International Classification of Disease 10<sup>th</sup> Revision algorithms for identifying influenza and respiratory syncytial virus hospitalizations Rafal Kustra PLoS ONE
Antibody and cell-mediated immune responses are correlates of protection against influenza infection in vaccinated older adults Mark Loeb Vaccines
A systematic review and narrative synthesis of the use of environmental samples for the surveillance of avian influenza viruses in wild waterbirds Natalie Prystajecky Journal of Wildlife Diseases
Nobody ever questions—Polypharmacy in care homes: A mixed methods evaluation of a multidisciplinary medicines optimisation initiative Jeff Round PLoS ONE
Alternative dose allocation strategies to increase benefits from constrained COVID-19 vaccine supply David Fisman, Ashleigh Tuite Annals of Internal Medicine
Can Cyanobacterial Diversity in the Source Predict the Diversity in Sludge and the Risk of Toxin Release in a Drinking Water Treatment Plant? Jesse Shapiro Toxins
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Preface David Buckeridge Studies in Computational Intelligence
Classification of porcine reproductive and respiratory syndrome virus in Ontario using Bayesian phylogenetics and assessment of temporal trends Amy Greer Canadian Journal of Veterinary Research
Refined Upper Bounds on the Size of the Condensed Neighbourhood of Sequences Cedric Chauve Proceedings of the Prague Stringology Conference 2021, PSC 2021
A first-in-human phase i study of the oral p38 MAPK inhibitor, ralimetinib (LY2228820 Dimesylate), in patients with advanced cancer Xuekui Zhang Clinical Cancer Research
On the Origin of Coexisting Species Sarah Otto Trends in Ecology and Evolution
Patterns of smallpox mortality in London, England, over three centuries David Earn PLoS Biology
Economic and Behavioral Influencers of Vaccination and Antimicrobial Use Caroline Wagner Frontiers in Public Health
Temporal Associations between Community Incidence of COVID-19 and Nursing Home Outbreaks in Ontario, Canada Ashleigh Tuite Journal of the American Medical Directors Association
Leveraging large-deviation statistics to decipher the stochastic properties of measured trajectories Caroline Wagner New Journal of Physics
On logistic Box–Cox regression for flexibly estimating the shape and strength of exposure-disease relationships Xuekui Zhang Canadian Journal of Statistics
Design of 18 nm Doxorubicin-Loaded 3-Helix Micelles: Cellular Uptake and Cytotoxicity in Patient-Derived GBM6 Cells Michael WZ Li ACS Biomaterials Science and Engineering
Validation of a Clinical Prediction Rule to Predict Asymptomatic Chlamydia and Gonorrhea Infections among Internet-Based Testers Sharmistha Mishra Sexually Transmitted Diseases
Coevolution fails to maintain genetic variation in a host–parasite model with constant finite population size Sarah Otto Theoretical Population Biology
Characterizing Pain in Children with Acute Gastroenteritis Who Present for Emergency Care Larry Svenson Journal of Pediatrics
The evolution of age-specific choosiness when mating Troy Day Journal of Evolutionary Biology
Quarantine and the risk of COVID-19 importation Julien Arino Epidemiology and Infection
From cervical cancer elimination to eradication of vaccine-type human papillomavirus: Feasibility, public health strategies and cost-effectiveness Marc Brisson Preventive Medicine
Reliability of nonlocalizing signs and symptoms as indicators of the presence of infection in nursing-home residents Mark Loeb Infection Control and Hospital Epidemiology
In-depth analysis of genetic variation associated with severe west nile viral disease Mark Loeb Vaccines
The Prevalence of Campylobacter in Live Cattle, Turkey, Chicken, and Swine in the United States and Canada: A Systematic Review and Meta-Analysis Amy Greer Foodborne Pathogens and Disease
Dépistage actif chez les groupes courant un risque accru de contracter le SRAS-CoV-2 au Canada : coûts et ressources humaines nécessaires Marc Brisson CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne
Façonner l'avenir de la pandémie de COVID-19 au Canada Amy Greer, Ashleigh Tuite CMAJ
Modeling the coronavirus disease 2019 pandemic: A comprehensive guide of infectious disease and decision-analytic models Sharmistha Mishra Journal of Clinical Epidemiology
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing Caroline Colijn, Daniel Coombs PLoS Computational Biology
Effect of media-induced modification of travel rates on disease transmission in a multiple patch setting Julien Arino Journal of Applied Analysis and Computation
Evaluating health literacy among adolescent and young adult pregnant women from a low-income area of northeast brazil Diego Bassani International Journal of Environmental Research and Public Health
Estimating epidemic coupling between populations from the time to invasion: Estimating epidemic coupling between populations from the time to invasion David Earn Journal of the Royal Society Interface
Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria Sandrine Moreira Nucleic Acids Research
Corrigendum: The Complex Relationship Between Veterinarian Mental Health and Client Satisfaction (Frontiers in Veterinary Science, (2020), 7, (92), 10.3389/fvets.2020.00092) Amy Greer Frontiers in Veterinary Science
Quantifying the Evolving Contribution of HIV Interventions and Key Populations to the HIV Epidemic in Yaoundé, Cameroon Sharmistha Mishra Journal of acquired immune deficiency syndromes (1999)
Open government data, uncertainty and coronavirus: An infodemiological case study Shelby Sturrock Social Science and Medicine
Probabilistic One-Way Sensitivity Analysis with Multiple Comparators: The Conditional Net Benefit Frontier Christopher McCabe PharmacoEconomics
Diversity Assessment of Toxic Cyanobacterial Blooms during Oxidation Jesse Shapiro Toxins
Crowdfunding for complementary and alternative medicine: What are cancer patients seeking? Timothy Caulfield PLoS ONE
Does diversity beget diversity in microbiomes? Jesse Shapiro eLife
Smoking patterns based on birth-cohort-specific histories from 1965 to 2013, with projections to 2041 Doug Manuel Health reports
What We Know Now: An Economic Evaluation of Chickenpox Vaccination and Dose Timing Using an Agent-Based Model Nathaniel Osgood Value in Health
Relationships between type of hoof lesion and behavioral signs of lameness in Holstein cows housed in Canadian tiestall facilities Javier Sanchez Journal of Dairy Science
Transmission analysis of a large tuberculosis outbreak in london: A mathematical modelling study using genomic data Caroline Colijn Microbial Genomics
Adequacy of prenatal care in northeast Brazil: Pilot data comparing attainment of standard care criteria for first-time adolescent and adult pregnant women Diego Bassani International Journal of Women's Health
Derivation and Validation of Clinical Prediction Rules for COVID-19 Mortality in Ontario, Canada David Fisman, Amy Greer Open Forum Infectious Diseases
Life expectancy and health-adjusted life expectancy in people with inflammatory bowel disease Doug Manuel CMAJ
Tocilizumab in the Management of COVID-19: A Preliminary Report Michael WZ Li American Journal of the Medical Sciences
Consequences of nest site selection vary along a tidal gradient Benjamin Bolker Journal of Animal Ecology
Spread of Dutch elm disease in an urban forest Julien Arino Ecological Modelling
Investigating the impact of the mycorrhizal inoculum on the resident fungal community and on plant growth Rebecca Tyson Ecological Modelling
Characteristics of a population-based multiple sclerosis cohort treated with disease-modifying drugs in a universal healthcare setting Larry Svenson Expert Review of Neurotherapeutics
Impact of climate and public health interventions on the COVID-19 pandemic: A prospective cohort study David Fisman CMAJ
Ending COVID-19: progress and gaps in research—highlights of the July 2020 GloPID-R COVID-19 Research Synergies Meetings David Fisman BMC Medicine
COVID-19 and immune boosting' on the internet: A content analysis of Google search results Timothy Caulfield BMJ Open
Modelling airport catchment areas to anticipate the spread of infectious diseases across land and air travel Ashleigh Tuite Spatial and Spatio-temporal Epidemiology
The role of case importation in explaining differences in early SARS-CoV-2 transmission dynamics in Canada—A mathematical modeling study of surveillance data Marc Brisson, David Buckeridge International Journal of Infectious Diseases
Cyclic epidemics and extreme outbreaks induced by hydro-climatic variability and memory: Cyclic epidemics and extreme outbreaks induced by hydro-climatic variability and memory Caroline Wagner Journal of the Royal Society Interface
Mathematical modeling of COVID-19 transmission and mitigation strategies in the population of Ontario, Canada David Fisman, Ashleigh Tuite CMAJ
Discussing non-invasive prenatal testing on Reddit: The benefits, the concerns, and the comradery Timothy Caulfield Prenatal Diagnosis
Congenital Anomalies of the Kidney and Urinary Tract (CAKUT): An Emerging Relationship With Pregestational Diabetes Mellitus Among First Nations and Non-First Nations People in Saskatchewan—Results From the DIP: ORRIIGENSS Project Nathaniel Osgood Canadian Journal of Diabetes
Exploiting the full potential of Bayesian networks in predictive ecology Mark Lewis Methods in Ecology and Evolution
Relationship of Patent Ductus Arteriosus Echocardiographic Markers With Descending Aorta Diastolic Flow Diego Bassani Journal of Ultrasound in Medicine
Developments in asthma incidence and prevalence in Alberta between 1995 and 2015 Larry Svenson Allergy, Asthma and Clinical Immunology
Heterogeneity in testing, diagnosis and outcome in SARS-CoV-2 infection across outbreak settings in the Greater Toronto Area, Canada: an observational study Rafal Kustra CMAJ open
On measuring the inequity of financing health care in the United States and the redistribution of income through health care financing in Canada Michael Wolfson American Journal of Public Health
Influenza Vaccination to Reduce Cardiovascular Morbidity and Mortality in Patients With COVID-19: JACC State-of-the-Art Review Mark Loeb Journal of the American College of Cardiology
Effects of 21st-century climate, land use, and disturbances on ecosystem carbon balance in California Colin Daniel Global Change Biology
Web and phone-based COVID-19 syndromic surveillance in Canada: A cross-sectional study David Fisman, Ashleigh Tuite PLoS ONE
Prospective, randomised clinical trial of four different presurgical hand antiseptic techniques in equine surgery Javier Sanchez Equine Veterinary Journal
Crowdfunding cannabidiol (CBD) for cancer: Hype and misinformation on gofundme Timothy Caulfield American Journal of Public Health
Eco-evolutionary dynamics of range expansion Mark Lewis Ecology
Working in a bubble: How can businesses reopen while limiting the risk of COVID-19 outbreaks? Troy Day, David Fisman CMAJ
A unifying theory for two-dimensional spatial redistribution kernels with applications in population spread modelling: A unifying theory for two-dimensional spatial redistribution kernels with applications in population spread modelling Mark Lewis Journal of the Royal Society Interface
Migratory hosts can maintain the high-dose/refuge effect in a structured host-parasite system: The case of sea lice and salmon Mark Lewis Evolutionary Applications
Knowledge-based isocenter selection in radiosurgery planning Dionne Aleman Medical Physics
How to measure the impacts of antibiotic resistance and antibiotic development on empiric therapy: New composite indices Amy Hurford BMJ Open
Drug treatments for covid-19: Living systematic review and network meta-Analysis Mark Loeb The BMJ
Safe management of bodies of deceased persons with suspected or confirmed COVID-19: A rapid systematic review Mark Loeb BMJ Global Health
Trends in hepatitis C virus seroprevalence and associated risk factors among men who have sex with men in Montréal: Results from three cross-sectional studies (2005, 2009, 2018) Mathieu Maheu-Giroux Sexually Transmitted Infections
Testing the socioeconomic and environmental determinants of better child-health outcomes in Africa: A cross-sectional study among nations Sarah Otto BMJ Open
Protocol for a feasibility randomised trial of low-intensity interventions for antenatal depression: ADAGIO trial comparing interpersonal counselling with cognitive behavioural therapy Jeff Round BMJ Open
Clinical and cost-effectiveness of the Ross procedure versus conventional aortic valve replacement in young adults Jeff Round Open Heart
Mirtazapine added to SSRIs or SNRIs for treatment resistant depression in primary care: Phase III randomised placebo controlled trial (MIR) Jeff Round BMJ (Online)
Nurse-led medicines' monitoring in care homes study protocol: A process evaluation of the impact and sustainability of the adverse drug reaction (ADRe) profile for mental health medicines Jeff Round BMJ Open
Exploring the relationship between frequent internet use and health and social care resource use in a community-based cohort of older adults: An observational study in primary care Jeff Round BMJ Open
A cohort study of regional migration and the risks of attempted suicide and violent assault injury Larry Svenson Injury Prevention
Genetic susceptibility to beryllium: A case-referent study of men and women of working age with sarcoidosis or other chronic lung disease Larry Svenson Occupational and Environmental Medicine
Measurement of coverage, compliance and determinants of uptake in a publicly funded rotavirus vaccination programme: A retrospective cohort study Larry Svenson BMJ Open
Using population-wide administrative and laboratory data to estimate type- A nd subtype-specific influenza vaccine effectiveness: A surveillance protocol Larry Svenson BMJ Open
Behavioural characteristics and abdominal obesity among Brazilian shift working women Diego Bassani Public Health Nutrition
Linear growth and mid-childhood cognitive outcomes in three birth cohorts of term-born children: An approach to integrating three growth models to explore critical windows Diego Bassani BMJ Open
Palivizumab's real-world effectiveness: A population-based study in Ontario, Canada, 1993-2017 David Fisman Archives of Disease in Childhood
Age-stratified burden of pneumococcal community acquired pneumonia in hospitalised Canadian adults from 2010 to 2015 Mark Loeb BMJ Open Respiratory Research
Study protocol for two complementary trials of non-steroidal or opioid analgesia use for children aged 6 to 17 years with musculoskeletal injuries (the No OUCH study) Christopher McCabe BMJ Open
'Turning the tide' on hyperglycemia in pregnancy: insights from multiscale dynamic simulation modeling Nathaniel Osgood BMJ open diabetes research &amp; care
Exploring how epidemic context influences syphilis screening impact: A mathematical modeling study Ashleigh Tuite Sexually Transmitted Diseases
Liver Injury in Liver Transplant Recipients With Coronavirus Disease 2019 (COVID-19): U.S. Multicenter Experience Michael WZ Li Hepatology
When to be temperate: On the fitness benefits of lysis vs. Lysogeny Jonathan Dushoff Virus Evolution
Clinical impact and cost-effectiveness of integrating smoking cessation into lung cancer screening: a microsimulation model Michael Wolfson CMAJ open
Designing sub-20 nm self-assembled nanocarriers for small molecule delivery: Interplay among structural geometry, assembly energetics, and cargo release kinetics Michael WZ Li Journal of Controlled Release
Fast estimation of time-varying infectious disease transmission rates David Earn PLoS Computational Biology
Anthropometric data quality assessment in multisurvey studies of child growth Diego Bassani American Journal of Clinical Nutrition
Global evidence of gender inequity in academic health research: A living scoping review protocol Christopher McCabe JBI Evidence Synthesis
Active testing of groups at increased risk of acquiring SARS-CoV-2 in Canada: Costs and human resource needs Marc Brisson CMAJ
Carbapenemase-producing Enterobacterales in hospital drains in Southern Ontario, Canada David Fisman Journal of Hospital Infection
"immune Boosting" in the time of COVID: Selling immunity on Instagram Timothy Caulfield Allergy, Asthma and Clinical Immunology
Non-steroidal or opioid analgesia use for children with musculoskeletal injuries (the No OUCH study): Statistical analysis plan Christopher McCabe, Jeff Round Trials
Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training Christopher McCabe PLoS ONE
Six versus 12 months’ adjuvant trastuzumab in patients with HER2-positive early breast cancer: The PERSEPHONE non-inferiority RCT Christopher McCabe Health Technology Assessment
Restoring trust: COVID-19 and the future of long-term care in Canada Michael Wolfson Facets
Effect of an integrated neonatal care kit on cause-specific neonatal mortality in rural Pakistan Diego Bassani Global Health Action
A graph-theoretic barcode ordering model for linked-reads Cedric Chauve Leibniz International Proceedings in Informatics, LIPIcs
Nongenetic inheritance and multigenerational plasticity in the Nematode C. Elegans Troy Day eLife
A pragmatic randomized controlled trial of multi-dose oral ondansetron for pediatric gastroenteritis (the DOSE-AGE study): Statistical analysis plan Christopher McCabe Trials
Assessing oligonucleotide designs from early lab developed PCR diagnostic tests for SARS-CoV-2 using the PCR_strainer pipeline Natalie Prystajecky Journal of Clinical Virology
Genetics and Age-Related Eye Disease Study Formulation Interaction in Neovascular Age-Related Macular Degeneration Rafal Kustra Journal of VitreoRetinal Diseases
Poisson integral type quarantine in a stochastic SIR system Troy Day Mathematical Biosciences and Engineering
Adjoint-Based Accelerated Adaptive Refinement in Frequency Domain 3-D Finite Element Method Scattering Problems Donald Estep IEEE Transactions on Antennas and Propagation
Potential role of social distancing in mitigating spread of coronavirus disease, South Korea Jonathan Dushoff Emerging Infectious Diseases
Shaping the future of the COVID-19 pandemic in Canada Ashleigh Tuite CMAJ
Clinical Course and Molecular Viral Shedding among Asymptomatic and Symptomatic Patients with SARS-CoV-2 Infection in a Community Treatment Center in the Republic of Korea Mark Loeb JAMA Internal Medicine
A survey of management practices that influence calf welfare and an estimation of the annual calf mortality risk in pastured dairy herds in Uruguay Javier Sanchez Journal of Dairy Science
The consumer representation of DNA ancestry testing on YouTube Timothy Caulfield New Genetics and Society
SeroTracker: a global SARS-CoV-2 seroprevalence dashboard David Buckeridge, Tyler Williamson The Lancet Infectious Diseases
Review of high dose vancomycin in the treatment of Clostridioides difficile infection Mark Loeb Infectious Diseases
Use of facemasks during the COVID-19 pandemic Mark Loeb The Lancet Respiratory Medicine
Genomic variant-identification methods may alter mycobacterium tuberculosis transmission inferences Caroline Colijn Microbial Genomics
Age is just a number: A critically important number for covid-19 case fatality David Fisman, Amy Greer, Ashleigh Tuite Annals of Internal Medicine
HASLR: Fast Hybrid Assembly of Long Reads Cedric Chauve iScience
Epidemiology of varicella among immigrants and non-immigrants in Quebec, Canada, before and after the introduction of childhood varicella vaccination: a retrospective cohort study Marc Brisson The Lancet Infectious Diseases
Reconciling early-outbreak estimates of the basic reproductive number and its uncertainty: framework and applications to the novel coronavirus (SARS-CoV-2) outbreak Benjamin Bolker, Jonathan Dushoff, David Earn Journal of the Royal Society Interface
First measurement of the charged current νμ double differential cross section on a water target without pions in the final state Dean Karlen, Dean Karlen Physical Review D
Instability of Suicidal Ideation in Patients Hospitalized for Depression: An Exploratory Study Using Smartphone Ecological Momentary Assessment Nathaniel Osgood Archives of Suicide Research
Quantifying the annual incidence and underestimation of seasonal influenza: A modelling approach Julien Arino Theoretical Biology and Medical Modelling
The potential of smartphone apps in informing protobacco and antitobacco messaging efforts among underserved communities: Longitudinal observational study Nathaniel Osgood Journal of Medical Internet Research
Expenditures on childbirth care: A comparison of the 2004 and 2015 birth cohorts in Pelotas, Rio Grande do Sul State, Brazil Diego Bassani Cadernos de Saude Publica
The law and problematic marketing by private umbilical cord blood banks Timothy Caulfield BMC Medical Ethics
Surviving Sepsis Campaign: Guidelines on the Management of Critically Ill Adults with Coronavirus Disease 2019 (COVID-19) Mark Loeb Critical Care Medicine
Inferring generation-interval distributions from contact-tracing data Jonathan Dushoff Journal of the Royal Society Interface
Evidence for transmission of covid-19 prior to symptom onset Caroline Colijn eLife
Relative Model Fit Does Not Predict Topological Accuracy in Single-Gene Protein Phylogenetics Jesse Shapiro Molecular Biology and Evolution
Simultaneous measurement of the muon neutrino charged-current cross section on oxygen and carbon without pions in the final state at T2K Dean Karlen, Dean Karlen Physical Review D
On the evolutionary epidemiology of SARS-CoV-2 Troy Day, Sarah Otto Current Biology
Climatological, virological and sociological drivers of current and projected dengue fever outbreak dynamics in Sri Lanka Caroline Wagner Journal of the Royal Society Interface
First combined measurement of the muon neutrino and antineutrino charged-current cross section without pions in the final state at T2K Dean Karlen, Dean Karlen Physical Review D
Physical distancing, face masks, and eye protection to prevent person-to-person transmission of SARS-CoV-2 and COVID-19: a systematic review and meta-analysis Mark Loeb The Lancet
Extraction and Detection of Avian Influenza Virus From Wetland Sediment Using Enrichment-Based Targeted Resequencing Natalie Prystajecky Frontiers in Veterinary Science
C'est vraiment compliqué: A case study on the delivery of maternal and child health and nutrition interventions in the conflict-affected regions of Mali Diego Bassani Conflict and Health
Risk for covid-19 resurgence related to duration and effectiveness of physical distancing in ontario, canada David Fisman, Amy Greer, Ashleigh Tuite Annals of Internal Medicine
Multi-dose Oral Ondansetron for Pediatric Gastroenteritis: Study Protocol for the multi-DOSE oral ondansetron for pediatric Acute GastroEnteritis (DOSE-AGE) pragmatic randomized controlled trial Christopher McCabe Trials
Efficacy and safety of convalescent plasma for severe COVID-19 based on evidence in other severe respiratory viral infections: a systematic review and meta-analysis Mark Loeb CMAJ
A hybrid gravity and route choice model to assess vector traffic in large-scale road networks Mark Lewis Royal Society Open Science
Transient dynamics of a stoichiometric cyanobacteria model via multiple-scale analysis Mark Lewis SIAM Journal on Applied Mathematics
Feasibility and preliminary effectiveness of group antenatal care in Senegalese health posts: A pilot implementation trial Diego Bassani Health Policy and Planning
Real-time PCR-based SARS-CoV-2 detection in Canadian laboratories Natalie Prystajecky Journal of Clinical Virology
The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreak Jonathan Dushoff Epidemics
Calibration of individual-based models to epidemiological data: A systematic review Jonathan Dushoff PLoS Computational Biology
Implicit hype? Representations of platelet rich plasma in the news media Timothy Caulfield PLoS ONE
Social evolution under demographic stochasticity Troy Day PLoS Computational Biology
Correction: Male and female bees show large differences in floral preference(PLoS ONE (2019)14:4 (e0214909)Doi:10.1371/journal.pone.0214909) Jonathan Dushoff PLoS ONE
Male and female bees show large differences in floral preference Jonathan Dushoff PLoS ONE
Intrinsic dimensionality of human behavioral activity data Nathaniel Osgood PLoS ONE
Turning conceptual systems maps into dynamic simulation models: An Australian case study for diabetes in pregnancy Nathaniel Osgood PLoS ONE
Nurse-led medicines' monitoring in care homes, implementing the Adverse Drug Reaction (ADRe) Profile improvement initiative for mental health medicines: An observational and interview study Jeff Round PLoS ONE
Social and structural factors associated with substance use within the support network of adults living in precarious housing in a socially marginalized neighborhood of Vancouver, Canada Alexander Rutherford PLoS ONE
Streptococcus agalactiae is not always an obligate intramammary pathogen: Molecular epidemiology of GBS from milk, feces and environment in Colombian dairy herds Javier Sanchez PLoS ONE
Effect of influenza vaccination of children on infection rate in hutterite communities: Follow-up study of a randomized trial David Earn PLoS ONE
Control of an HIV epidemic among injection drug users: Simulation modeling on complex networks Alexander Rutherford Proceedings - Winter Simulation Conference
The distance and median problems in the single-cut-or-join model with single-gene duplications Cedric Chauve Algorithms for Molecular Biology
Erratum: Interactive effects of tree size, crown exposure and logging on drought-induced mortality (Philosophical Transactions of the Royal Society B: Biological Sciences (2018) 373 (20180189) DOI: 10.1098/rstb.2018.0189) Benjamin Bolker Philosophical Transactions of the Royal Society B: Biological Sciences
Exponentially few RNA structures are designable Cedric Chauve ACM-BCB 2019 - Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics
Quantification of small-scale heterogeneity in aquatic aminopeptidase activity Brian Gaas Aquatic Microbial Ecology
Treatment of patients with nonsevere and severe coronavirus disease 2019: An evidencebased guideline Mark Loeb CMAJ
A simple model for COVID-19 Julien Arino Infectious Disease Modelling
Non-Invasive Prenatal Screening: Navigating the Relevant Legal Norms Timothy Caulfield Journal of Obstetrics and Gynaecology Canada
Estimation of COVID-19 burden in Egypt – Authors' reply Ashleigh Tuite The Lancet Infectious Diseases
Characterizing the distinctive acoustic cues of Mandarin tones Paul Tupper Journal of the Acoustical Society of America
Risk of Cardiovascular Events and Mortality Among Elderly Patients With Reduced GFR Receiving Direct Oral Anticoagulants Doug Manuel American Journal of Kidney Diseases
Search for Electron Antineutrino Appearance in a Long-Baseline Muon Antineutrino Beam Dean Karlen, Dean Karlen Physical Review Letters
Enhancing the monitoring of fallen stock at different hierarchical administrative levels: An illustration on dairy cattle from regions with distinct husbandry, demographical and climate traits Javier Sanchez BMC Veterinary Research
Simultaneous optimization of isocenter locations and sector duration in radiosurgery Dionne Aleman Physics in Medicine and Biology
Modeling and comparison of alternative approaches for sector duration optimization in a dedicated radiosurgery system Dionne Aleman Physics in Medicine and Biology
Estimating the population impact of hypothetical breastfeeding interventions in a low-income population in Los Angeles County: An agent-based model Nathaniel Osgood PLoS ONE
Predicting the short-term success of human influenza virus variants with machine learning Caroline Colijn Proceedings of the Royal Society B: Biological Sciences
Breakpoint distance and PQ-trees Cedric Chauve Information and Computation
Targeted resequencing of wetland sediment as a tool for avian influenza virus surveillance Natalie Prystajecky Journal of Wildlife Diseases
Real-world direct healthcare costs of treating recurrent high-grade serous ovarian cancer with cytotoxic chemotherapy Michael Wolfson Journal of Comparative Effectiveness Research
Surviving Sepsis Campaign: guidelines on the management of critically ill adults with Coronavirus Disease 2019 (COVID-19) Mark Loeb Intensive Care Medicine
A Curious Possible Prime Pattern Benjamin Bolker Mathematics Magazine
Two cases of type-a haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes Jesse Shapiro Microbial Genomics
Estimation of the COVID-19 burden in Egypt through exported case detection Ashleigh Tuite The Lancet Infectious Diseases
Diversity within mutualist guilds promotes coexistence and reduces the risk of invasion from an alien mutualist Rebecca Tyson Proceedings of the Royal Society B: Biological Sciences
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals Cedric Chauve Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Classification of origin with feature selection and network construction for folk tunes Caroline Colijn Pattern Recognition Letters
Modeling the dispersal–reproduction trade-off in an expanding population Mark Lewis Theoretical Population Biology
Policy Challenges for Organ Allocation in an Era of “Precision Medicine” Timothy Caulfield Canadian Journal of Kidney Health and Disease
Bayesian risk assessment model of human cryptosporidiosis cases following consumption of raw Eastern oysters (Crassostrea virginica) contaminated with Cryptosporidium oocysts in the Hillsborough River system in Prince Edward Island, Canada Javier Sanchez Food and Waterborne Parasitology
The ecology of medical care for adults in Alberta, 2002/03 to 2016/17: a retrospective cohort study Larry Svenson CMAJ open
Effects of contemporary land-use and land-cover change on the carbon balance of terrestrial ecosystems in the United States Colin Daniel Environmental Research Letters
Prevalence and mechanisms of azole resistance in clinical isolates of Aspergillus section Fumigati species in a Canadian tertiary care centre, 2000 to 2013 Sandrine Moreira Journal of Antimicrobial Chemotherapy
A maximum entropy method for the prediction of size distributions Caroline Colijn Entropy
The Price equation and evolutionary epidemiology Troy Day Philosophical Transactions of the Royal Society B: Biological Sciences
Annals On Call - Understanding the Spread of COVID-19 David Fisman Annals of internal medicine
Developing evidence-based guidance for assessment of suspected infections in care home residents Mark Loeb BMC Geriatrics
A Note on Observation Processes in Epidemic Models Benjamin Bolker Bulletin of Mathematical Biology
A Posteriori Error Estimation and Adaptive Discretization Refinement Using Adjoint Methods in CEM: A Study with a 1-D Higher Order FEM Scattering Example Donald Estep IEEE Transactions on Antennas and Propagation
Femtosecond Laser-Assisted Cataract Surgery Versus Phacoemulsification Cataract Surgery (FACT): A Randomized Noninferiority Trial Jeff Round Ophthalmology
Portrayal of umbilical cord blood research in the North American popular press: Promise or hype? Timothy Caulfield Regenerative Medicine
Assessing impact of MALDI mass spectroscopy on reducing directed antibiotic coverage time for Gram-negative organisms Mark Loeb PLoS ONE
Effects of updated demography, disability weights, and cervical cancer burden on estimates of human papillomavirus vaccination impact at the global, regional, and national levels: a PRIME modelling study Marc Brisson The Lancet Global Health
Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes Jesse Shapiro Microbial Genomics
Analysis of propagation for impulsive reaction-diffusion models Mark Lewis SIAM Journal on Applied Mathematics
Re: Van Asten et al.: No CFH/ARMS2 interaction with omega-3 fatty acids, low vs high zinc, or β-carotene versus Lutein and Zeaxanthin on progression of age-related macular degeneration in the Age-Related Eye Disease Study 2: Age-Related Eye Disease Study 2 Report No. 18 (Ophthalmology. 2019;126:1541-1548) Rafal Kustra Ophthalmology
Evolutionary consequences of feedbacks between within-host competition and disease control Troy Day Evolution, Medicine and Public Health
2019 community-acquired pneumonia treatment guidelines: There is a need for a change toward more parsimonious antibiotic use Mark Loeb American Journal of Respiratory and Critical Care Medicine
Dataset of mountain pine beetle outbreak dynamics and direct control in Cypress Hills, SK Mark Lewis Data in Brief
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models Cedric Chauve Journal of Mathematical Biology
Female infants are more susceptible to the effects of maternal antenatal depression; findings from the Pelotas (Brazil) Birth Cohort Study Diego Bassani Journal of Affective Disorders
HPV vaccination and sexual behaviour in healthcare seeking young women in Luxembourg Marc Brisson PeerJ
Compliance rates, advantages, and drawbacks of a smartphone-based method of collecting food history and foodborne illness data Nathaniel Osgood Journal of Food Protection
Foodborne outbreak investigation: Effect of recall inaccuracies on food histories Nathaniel Osgood Journal of Food Protection
A survey of raw frozen breaded chicken products for salmonella in British Columbia, Canada, and phylogenetically associated illnesses Natalie Prystajecky Journal of Food Protection
The fundamental advantages of temporal networks Sean Cornelius Science
Modifiable factors related to life-space mobility in community-dwelling older adults: Results from the Canadian Longitudinal Study on Aging Jonathan Dushoff BMC Geriatrics
Mortality impact of achieving WHO cervical cancer elimination targets: a comparative modelling analysis in 78 low-income and lower-middle-income countries Marc Brisson The Lancet
Impact of HPV vaccination and cervical screening on cervical cancer elimination: a comparative modelling analysis in 78 low-income and lower-middle-income countries Marc Brisson The Lancet
Mountain pine beetle outbreak duration and pine mortality depend on direct control effort Mark Lewis Journal of Environmental Management
Population-level impact of human papillomavirus vaccination – Authors' reply Marc Brisson The Lancet
Measurement of the muon neutrino charged-current single π+ production on hydrocarbon using the T2K off-axis near detector ND280 Dean Karlen, Dean Karlen Physical Review D
Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2 Sandrine Moreira BMC Structural Biology
Density Dependence, Senescence, and Williams’ Hypothesis Troy Day Trends in Ecology and Evolution
Social values for health technology assessment in Canada: A scoping review of hepatitis C screening, diagnosis and treatment Christopher McCabe BMC Public Health
Use of medications by breastfeeding women in the 2015 pelotas (Brazil) birth cohort study Diego Bassani International Journal of Environmental Research and Public Health
Sources of viral respiratory infections in Canadian acute care hospital healthcare personnel Mark Loeb Journal of Hospital Infection
The Timing and Nature of Behavioural Responses Affect the Course of an Epidemic Rebecca Tyson Bulletin of Mathematical Biology
Simultaneous prediction of multiple outcomes using revised stacking algorithms Xuekui Zhang Bioinformatics
Validity of the Brief Infant Sleep Questionnaire (BISQ) in Brazilian children Diego Bassani Sleep Medicine
Influenza increases invasive meningococcal disease risk in temperate countries David Fisman, Ashleigh Tuite Clinical Microbiology and Infection
Mathematical epidemiology in a data-rich world Julien Arino Infectious Disease Modelling
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies Cedric Chauve BMC Biology
Genetic risk for dengue hemorrhagic fever and dengue fever in multiple ancestries Mark Loeb EBioMedicine
Generalizing Outside the Training Set: When Can Neural Networks Learn Identity Effects? Paul Tupper Proceedings for the 42nd Annual Meeting of the Cognitive Science Society: Developing a Mind: Learning in Humans, Animals, and Machines, CogSci 2020
Measurement of neutrino and antineutrino neutral-current quasielasticlike interactions on oxygen by detecting nuclear deexcitation γ rays Dean Karlen, Dean Karlen Physical Review D
Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms Sandrine Moreira BMC Genomics
Systematic comparison of coexistence in models of drug-sensitive and drug-resistant pathogen strains Caroline Colijn, Alexander Rutherford Theoretical Population Biology
Pandemic influenza: Modelling and public health perspectives Julien Arino Mathematical Biosciences and Engineering
Effect of Parental Counseling on Infants' Healthy Sleep Habits in Brazil: A Randomized Clinical Trial Diego Bassani JAMA network open
Efficacy and immunogenicity of a single dose of human papillomavirus vaccine compared to no vaccination or standard three and two-dose vaccination regimens: A systematic review of evidence from clinical trials Marc Brisson Vaccine
Diffusion analysis of single particle trajectories in a Bayesian nonparametrics framework Daniel Coombs Physical Biology
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework Cedric Chauve BMC Bioinformatics
One-Way Sensitivity Analysis for Probabilistic Cost-Effectiveness Analysis: Conditional Expected Incremental Net Benefit Christopher McCabe PharmacoEconomics
Corrigendum to “Randomized controlled trial of influenza vaccine in patients with heart failure to reduce adverse vascular events (IVVE): Rationale and design” (American Heart Journal (2019) 212 (36–44), (S0002870319300432), (10.1016/j.ahj.2019.02.009)) Mark Loeb American Heart Journal
Effectiveness and cost-effectiveness of human papillomavirus vaccination through age 45 years in the United States Marc Brisson Annals of Internal Medicine
Negative-Type Diversities, a Multi-dimensional Analogue of Negative-Type Metrics Paul Tupper Journal of Geometric Analysis
Are healthcare personnel at higher risk of seasonal influenza than other working adults? Mark Loeb Infection Control and Hospital Epidemiology
Cost-effectiveness analysis of metformin with enzalutamide in the metastatic castrate-resistant prostate cancer setting Christopher McCabe The Canadian journal of urology
Epidemiology of Diabetes in Pregnancy Among First Nations and Non-First Nations Women in Saskatchewan, 1980‒2013. Part 2: Predictors and Early Complications; Results From the DIP: ORRIIGENSS Project Nathaniel Osgood Canadian Journal of Diabetes
The role of mathematical modelling in aiding public health policy decision-making: A case study of the BC opioid overdose emergency Daniel Coombs International Journal of Drug Policy
Social media surveillance for outbreak projection via transmission models: Longitudinal observational study Nathaniel Osgood JMIR Public Health and Surveillance
Seeking the optimal schedule for chickenpox vaccination in Canada: Using an agent-based model to explore the impact of dose timing, coverage and waning of immunity on disease outcomes Nathaniel Osgood Vaccine
Current Trends in Mathematical Epidemiology Julien Arino Bulletin of Mathematical Biology
Short communication: Whole-genome sequence analysis of 4 fecal bla<inf>CMY-2</inf>-producing Escherichia coli isolates from Holstein dairy calves Javier Sanchez Journal of Dairy Science
The “subluxation” issue: an analysis of chiropractic clinic websites Timothy Caulfield Archives of Physiotherapy
Agreement of antenatal care indicators from self-reported questionnaire and the antenatal care card of women in the 2015 Pelotas birth cohort, Rio Grande do Sul, Brazil Diego Bassani BMC Pregnancy and Childbirth
Epidemiology of Diabetes in Pregnancy Among First Nations and Non-First Nations Women in Saskatchewan, 1980‒2013. Part 1: Populations, Methodology and Frequencies (1980‒2009); Results From the DIP: ORRIIGENSS Project Nathaniel Osgood Canadian Journal of Diabetes
Comparative effectiveness and cost-effectiveness analysis of a urine metabolomics test vs. alternative colorectal cancer screening strategies Larry Svenson International Journal of Colorectal Disease
Error estimation and uncertainty quantification based on adjoint methods in computational electromagnetics Donald Estep 2019 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, APSURSI 2019 - Proceedings
HyAsP, a greedy tool for plasmids identification Cedric Chauve Bioinformatics
Correction to: Determinants of Influenza Mortality Trends: Age-Period-Cohort Analysis of Influenza Mortality in the United States, 1959–2016 (Demography, (2019), 56, 5, (1723-1746), 10.1007/s13524-019-00809-y) David Earn Demography
Overview of some advances in higher order frequency-domain CEM techniques Donald Estep Proceedings of the 2019 21st International Conference on Electromagnetics in Advanced Applications, ICEAA 2019
Treatment of urinary tract infections in the era of antimicrobial resistance and new antimicrobial agents Mark Loeb Postgraduate Medicine
The health and economic burden of pertussis in Canada: A microsimulation study David Fisman Vaccine
“Any news?” Special issue in honor of Marcus Feldman's 75th birthday Sarah Otto Theoretical Population Biology
Functional Diversity: An Epistemic Roadmap Jesse Shapiro BioScience
Comparing alternating pressure mattresses and high-specification foam mattresses to prevent pressure ulcers in high-risk patients: The PRESSURE 2 RCT Christopher McCabe Health Technology Assessment
Measurement of the muon neutrino charged-current cross sections on water, hydrocarbon and iron, and their ratios, with the T2K on-axis detectors Dean Karlen, Dean Karlen Progress of Theoretical and Experimental Physics
HIV control strategies for sex worker–client contact networks Alexander Rutherford Journal of the Royal Society Interface
The sampling distribution of the total correlation for multivariate Gaussian Random variables Troy Day Entropy
Evaluating the Potential for Sea Lice to Evolve Freshwater Tolerance as a Consequence of Freshwater Treatments in Salmon Aquaculture Javier Sanchez Aquaculture Environment Interactions
Random fluctuations around a stable limit cycle in a stochastic system with parametric forcing Rebecca Tyson Journal of Mathematical Biology
Hard choices: Reflections from the tomb of the unknown patient Christopher McCabe, Jeff Round Healthcare Management Forum
Search for heavy neutrinos with the T2K near detector ND280 Dean Karlen, Dean Karlen Physical Review D
Particulate matter exposure induces persistent lung inflammation and endothelial dysfunction Xuekui Zhang American Journal of Physiology - Lung Cellular and Molecular Physiology
HPV-FRAME: A consensus statement and quality framework for modelled evaluations of HPV-related cancer control Marc Brisson Papillomavirus Research
Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canada Benjamin Bolker, Jonathan Dushoff, David Earn BMC Public Health
Fighting the Public Health Burden of AIDS with the Human Pegivirus Troy Day American Journal of Epidemiology
A sheep in Wolf’s clothing: Levels of deceit and detection in the evolution of cue-mimicry Sarah Otto Proceedings of the Royal Society B: Biological Sciences
Theory in service of narratives in evolution and ecology Sarah Otto American Naturalist
A Rheological Study of the Association and Dynamics of MUC5AC Gels Caroline Wagner Biomacromolecules
Predicting the impact of clustered risk and testing behaviour patterns on the population-level effectiveness of pre-exposure prophylaxis against HIV among gay, bisexual and other men who have sex with men in Greater Vancouver, Canada Daniel Coombs Epidemics
The Application of a Mathematical Model to Evaluate the Effectiveness of Control Strategies Against Ciona intestinalis in Mussel Production Javier Sanchez Frontiers in Veterinary Science
Bayesian methods for time series of count data Nathaniel Osgood Communications in Statistics: Simulation and Computation
MentaLiST - A fast MLST caller for large MLST schemes Cedric Chauve Microbial genomics
Validation of the Seegene RV15 multiplex PCR for the detection of influenza A subtypes and influenza B lineages during national influenza surveillance in hospitalized adults Mark Loeb Journal of Medical Microbiology
Vibrio cholerae genomic diversity within and between patients Jesse Shapiro Microbial Genomics
Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data Benjamin Bolker Parasites and Vectors
Intermediate filament dynamics: Disassembly regulation Julien Arino International Journal of Biomathematics
Skewed temperature dependence affects range and abundance in a warming world Amy Hurford Proceedings of the Royal Society B: Biological Sciences
Regulatory and policy tools to address unproven stem cell interventions in Canada: The need for action Timothy Caulfield BMC Medical Ethics
Invariant predictions of epidemic patterns from radically different forms of seasonal forcing David Earn Journal of the Royal Society Interface
The burden of influenza in older adults: meeting the challenge Mark Loeb Aging Clinical and Experimental Research
Regularity underlies erratic population abundances in marine ecosystems Sean Cornelius Journal of the Royal Society Interface
A Lévy-flight diffusion model to predict transgenic pollen dispersal Rebecca Tyson Journal of the Royal Society Interface
Interactive effects of tree size, crown exposure and logging on drought-induced mortality Benjamin Bolker Philosophical Transactions of the Royal Society B: Biological Sciences
A novel Bayesian approach to predicting reductions in HIV incidence following increased testing interventions among gay, bisexual and other men who have sex with men in Vancouver, Canada Daniel Coombs Journal of the Royal Society Interface
Pathogen evolution in finite populations: Slow and steady spreads the best Troy Day Journal of the Royal Society Interface
Modelling the transmission dynamics of Campylobacter in Ontario, Canada, assuming house flies, Musca domestica, are a mechanical vector of disease transmission David Fisman Royal Society Open Science
Host allometry influences the evolution of parasite host-generalism: Theory and meta-analysis Amy Hurford Philosophical Transactions of the Royal Society B: Biological Sciences
Mechanistic movement models to understand epidemic spread Amy Hurford Philosophical Transactions of the Royal Society B: Biological Sciences
Next-generation tools for evolutionary invasion analyses Amy Hurford Journal of the Royal Society Interface
A paradox of state-dependent diffusion and how to resolve it Paul Tupper Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
The association between influenza vaccination and socioeconomic status in high income countries varies by the measure used: A systematic review Larry Svenson BMC Medical Research Methodology
Branch-and-check methods for multi-level operating room planning and scheduling Dionne Aleman International Journal of Production Economics
Pitfalls of prioritizing cost-effectiveness in the assessment of medical innovation: A comment on Wallis and Detsky guest editorial Christopher McCabe Journal of the Canadian Urological Association
Molecular variability of streptococcus uberis isolates from intramammary infections in canadian dairy farms from the maritime region Javier Sanchez Canadian Journal of Veterinary Research
Individual-based modelling of black bear (Ursus americanus) foraging in Whistler, BC: Reducing human-bear interactions Rebecca Tyson Ecological Modelling
Apparent shear thickening at low shear rates in polymer solutions can be an artifact of non-equilibration Caroline Wagner Applied Rheology
Search for neutral-current induced single photon production at the ND280 near detector in T2K Dean Karlen, Dean Karlen Journal of Physics G: Nuclear and Particle Physics
Injury-related health services use and mortality among Métis people in Alberta Larry Svenson Canadian Journal of Public Health
The relative impact of community and hospital antibiotic use on the selection of extended-spectrum beta-lactamase-producing Escherichia coli David Fisman Clinical Infectious Diseases
Voter models and external influence Rebecca Tyson Journal of Mathematical Sociology
Regional climate affects salmon lice dynamics, stage structure and management Amy Hurford Proceedings of the Royal Society B: Biological Sciences
Assessment of population immunity to measles in Ontario, Canada: a Canadian Immunization Research Network (CIRN) study Marc Brisson Human Vaccines and Immunotherapeutics
6 versus 12 months of adjuvant trastuzumab for HER2-positive early breast cancer (PERSEPHONE): 4-year disease-free survival results of a randomised phase 3 non-inferiority trial Christopher McCabe The Lancet
Dynamics and persistence of rabies in the Arctic Amy Hurford Polar Research
Alignment-free clustering of UMI tagged DNA molecules Cedric Chauve Bioinformatics
Arp2/3 complex-driven spatial patterning of the BCR enhances immune synapse formation, BCR signaling and b cell activation Daniel Coombs eLife
Planning Capacity for Mental Health and Addiction Services in the Emergency Department: A Discrete-Event Simulation Approach Dionne Aleman Journal of Healthcare Engineering
Acellular pertussis vaccine effectiveness and waning immunity in Alberta, Canada: 2010–2015, a Canadian Immunization Research Network (CIRN) study Larry Svenson Vaccine
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Protecting biodiversity in British Columbia: Recommendations for developing species at risk legislation Sarah Otto Facets
Adjoint-based uncertainty quantification in frequency-domain double higher-order fem Donald Estep 2019 International Applied Computational Electromagnetics Society Symposium in Miami, ACES-Miami 2019
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Microbial evolutionary medicine: from theory to clinical practice Jesse Shapiro The Lancet Infectious Diseases
Influenza vaccine effectiveness in preventing influenza-associated hospitalizations during pregnancy: A multi-country retrospective test negative design study, 2010–2016 Larry Svenson Clinical Infectious Diseases
Weather and livestock risk factors for Escherichia coli O157 human infection in Alberta, Canada Larry Svenson Epidemiology and Infection
Multiple Sclerosis Mortality Rates in Canada, 1975-2009 Larry Svenson Canadian Journal of Neurological Sciences
Medical tourism for CCSVI procedures in people with multiple sclerosis: An observational study Larry Svenson Canadian Journal of Neurological Sciences
Probability of Rhipicephalus microplus introduction into farms by cattle movement using a Bayesian Belief Network Javier Sanchez Ticks and Tick-borne Diseases
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Outbreaks of Norovirus and Acute Gastroenteritis Associated with British Columbia Oysters, 2016–2017 Natalie Prystajecky Food and Environmental Virology
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Connectionist approaches to generative phonology Paul Tupper The Routledge Handbook of Phonological Theory
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Reformulation, linearization, and decomposition techniques for balanced distributed operating room scheduling Dionne Aleman Omega (United Kingdom)
A response to “Personalised medicine and population health: breast and ovarian cancer” Michael Wolfson Human Genetics
Incorporating movement patterns to discern habitat selection: Black bears as a case study Benjamin Bolker Wildlife Research
Prevalence of hock, knee, and neck skin lesions and associated risk factors in dairy herds in the Maritime Provinces of Canada Javier Sanchez Journal of Dairy Science
Prevalence of lameness and associated risk factors on dairy farms in the Maritime Provinces of Canada Javier Sanchez Journal of Dairy Science
Non-Gaussian, non-ergodic, and non-Fickian diffusion of tracers in mucin hydrogels Caroline Wagner Soft Matter
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Decision support for optimal use of joint training funds in the Canadian armed forces Matthew MacLeod Analytics, Operations, and Strategic Decision Making in the Public Sector
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A practical generation-interval-based approach to inferring the strength of epidemics from their speed Jonathan Dushoff Epidemics
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A pooled analysis of FEV<inf>1</inf> decline in COPD patients randomized to inhaled corticosteroids or placebo Xuekui Zhang Chest
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Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers Sarah Otto Theoretical Population Biology
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Budesonide and the risk of pneumonia: a meta-analysis of individual patient data Xuekui Zhang The Lancet
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Equivalence of the Erlang-distributed SEIR epidemic model and the renewal equation David Earn SIAM Journal on Applied Mathematics
Effect of media-induced social distancing on disease transmission in a two patch setting Julien Arino Mathematical Biosciences
Infectious disease surveillance and modelling across geographic frontiers and scientific specialties Julien Arino The Lancet Infectious Diseases
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Symptom clusters in a population-based ambulatory cancer cohort validated using bootstrap methods Rafal Kustra European Journal of Cancer
Combining mirtazapine with ssris or snris for treatment-resistant depression: The MIR RCT Jeff Round Health Technology Assessment
Hyperconvexity and tight-span theory for diversities Paul Tupper Advances in Mathematics
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GPS measurement error gives rise to spurious 180° turning angles and strong directional biases in animal movement data Amy Hurford PLoS ONE
Linking antimicrobial prescribing to antimicrobial resistance in the ICU: Before and after an antimicrobial stewardship program Amy Hurford Epidemics
Changing Risk Behaviours and the HIV Epidemic: A Mathematical Analysis in the Context of Treatment as Prevention Alexander Rutherford PLoS ONE
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Design Parameters for Granzyme-Mediated Cytotoxic Lymphocyte Target-Cell Killing and Specificity Daniel Coombs Biophysical Journal
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Conditions for eradicating hepatitis C in people who inject drugs: A fibrosis aware model of hepatitis C virus transmission Daniel Coombs Journal of Theoretical Biology
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On the duration of the period between exposure to HIV and detectable infection Daniel Coombs Epidemics
Spatio-temporal spread of infectious pathogens of humans Julien Arino Infectious Disease Modelling
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Cell-Free DNA–Based Non-invasive Prenatal Screening for Common Aneuploidies in a Canadian Province: A Cost-Effectiveness Analysis Christopher McCabe Journal of Obstetrics and Gynaecology Canada
Analysis of emergency department length of stay for mental health visits: A case study of a Canadian academic hospital Dionne Aleman Canadian Journal of Emergency Medicine
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Cirrhosis with ascites in the last year of life: a nationwide analysis of factors shaping costs, health-care use, and place of death in England Jeff Round The Lancet Gastroenterology and Hepatology
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Exposure to antimicrobial-resistant Escherichia coli through the consumption of ground beef in Western Canada Javier Sanchez International Journal of Food Microbiology
Distribution of take-home opioid antagonist kits during a synthetic opioid epidemic in British Columbia, Canada: a modelling study Daniel Coombs The Lancet Public Health
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A multivariable assessment of the spatio-temporal distribution of pyrethroids performance on the sea lice Caligus rogercresseyi in Chile Javier Sanchez Spatial and Spatio-temporal Epidemiology
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework Cedric Chauve IEEE/ACM Transactions on Computational Biology and Bioinformatics
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Using “Big Data” in the Cost-Effectiveness Analysis of Next-Generation Sequencing Technologies: Challenges and Potential Solutions Christopher McCabe Value in Health
Balancing the Economics and Ethics of Personalised Oncology Christopher McCabe Trends in Cancer
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies Cedric Chauve IEEE/ACM Transactions on Computational Biology and Bioinformatics
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Efficient distribution estimation and uncertainty quantification for elliptic problems on domains with stochastic boundaries Donald Estep SIAM-ASA Journal on Uncertainty Quantification
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Antimicrobial-based dry cow therapy approaches for cure and prevention of intramammary infections: A protocol for a systematic review and meta-analysis Javier Sanchez Animal Health Research Reviews
Neptune: A bioinformatics tool for rapid discovery of genomic variation in bacterial populations Natalie Prystajecky Nucleic Acids Research
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Early Initiation of Tumor Necrosis Factor Antagonist–Based Therapy for Patients With Crohn's Disease Reduces Costs Compared With Late Initiation Christopher McCabe Clinical Gastroenterology and Hepatology
Effects of limiting memory capacity on the behaviour of exemplar dynamics Paul Tupper Journal of Applied Probability
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Salmonella enterica and extended-spectrum cephalosporin-resistant Escherichia coli recovered from Holstein dairy calves from 8 farms in New Brunswick, Canada Javier Sanchez Journal of Dairy Science
Cooking and co-ingested polyphenols reduce in vitro methylmercury bioaccessibility from fish and may alter exposure in humans Jesse Shapiro Science of the Total Environment
Relationship between enteric pathogens and acute gastroenteritis disease severity: a prospective cohort study Larry Svenson Clinical Microbiology and Infection
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Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases Troy Day Trends in Ecology and Evolution
An observational study showed that explaining randomization using gambling-related metaphors and computer-agency descriptions impeded randomized clinical trial recruitment Christopher McCabe Journal of Clinical Epidemiology
Alternative tumour necrosis factor inhibitors (TNFi) or abatacept or rituximab following failure of initial TNFi in rheumatoid arthritis: The SWITCH RCT Christopher McCabe Health Technology Assessment
Assessing concentration of antibiotics in tissue during oral treatments against piscirickettsiosis Javier Sanchez Preventive Veterinary Medicine
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The role of phenotypic plasticity in moderating evolutionary conflict Troy Day American Naturalist
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Benefits and costs of four approaches to improving rollover stability of cargo tank motor vehicles Kate Harback Transportation Research Record
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes Cedric Chauve BMC Genomics
The evolutionary response of virulence to host heterogeneity: A general model with application to myxomatosis in rabbits co-infected with intestinal helminths Benjamin Bolker Aegyptus
Human activity determines the presence of integron-associated and antibiotic resistance genes in Southwestern British Columbia Natalie Prystajecky Frontiers in Microbiology
Seasonally varying predation behavior and climate shifts are predicted to affect predator-prey cycles Rebecca Tyson American Naturalist
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Cell-free DNA modification dynamics in abiraterone acetate-treated prostate cancer patients Rafal Kustra Clinical Cancer Research
Niche separation increases with genetic distance among bloom-forming cyanobacteria Jesse Shapiro Frontiers in Microbiology
Phenotypic traits and resource quality as factors affecting male reproductive success in a toadfish Benjamin Bolker Behavioral Ecology
The Relative Contribution of Direct and Environmental Transmission Routes in Stochastic Avian Flu Epidemic Recurrence: An Approximate Analysis Rebecca Tyson Bulletin of Mathematical Biology
Once Bitten Twice Shy: Thinking Carefully Before Adopting the EQ-5D-5L Jeff Round PharmacoEconomics
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Measurement of the single π 0 production rate in neutral current neutrino interactions on water Dean Karlen, Dean Karlen Physical Review D
Stem cells and beta cell replacement therapy: A prospective health technology assessment study Christopher McCabe BMC Endocrine Disorders
Using simulation to model and optimize acute care access in relation to hospital bed count and bed distribution Alexander Rutherford Journal of Simulation
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Game Theoretic Models of Clear versus Plain Speech Paul Tupper Proceedings of the 40th Annual Meeting of the Cognitive Science Society, CogSci 2018
Comparative methods for reconstructing ancient genome organization Cedric Chauve Methods in Molecular Biology
The hefty fetal phenotype hypothesis revisited: High birth weight, type 2 diabetes and gestational diabetes in a Saskatchewan cohort of First Nations and non-First Nations women Nathaniel Osgood Journal of Developmental Origins of Health and Disease
Phase 1 and pharmacokinetic study of LY3007113, a p38 MAPK inhibitor, in patients with advanced cancer Xuekui Zhang Investigational New Drugs
Measurement of neutrino and antineutrino oscillations by the T2K experiment including a new additional sample of v<inf>e</inf> interactions at the far detector Dean Karlen, Dean Karlen Physical Review D
Age-dependent capillary thinning dynamics of physically-associated salivary mucin networks Caroline Wagner Journal of Rheology
Effect of human papillomavirus vaccination on cervical cancer screening in Alberta Larry Svenson CMAJ
Small RNA-mediated regulation of DNA dosage in the ciliate Oxytricha Sandrine Moreira RNA
Explanation and Elaboration of the Standards of Reporting of Neurological Disorders Checklist: A Guideline for the Reporting of Incidence and Prevalence Studies in Neuroepidemiology Larry Svenson Neuroepidemiology
A virtual marketplace for goods and services for people with social needs Dionne Aleman IHTC 2017 - IEEE Canada International Humanitarian Technology Conference 2017
Measurement of ν¯μ and νμ charged current inclusive cross sections and their ratio with the T2K off-axis near detector Dean Karlen, Dean Karlen Physical Review D
A stochastic inverse problem for multiscale models Donald Estep International Journal for Multiscale Computational Engineering
Healthcare Resource Uses and Out-of-Pocket Expenses Associated with Pulmonary TB Treatment in Thailand Jonathan Dushoff PharmacoEconomics - Open
The Geography and Scale of Soil-Transmitted Helminth Infections Shelby Sturrock Current Tropical Medicine Reports
Updated T2K measurements of muon neutrino and antineutrino disappearance using 1.5×1021 protons on target Dean Karlen, Dean Karlen Physical Review D
The effects of inhaled and oral corticosteroids on serum inflammatory biomarkers in COPD: An exploratory study Xuekui Zhang Therapeutic Advances in Respiratory Disease
Collaborative operating room planning and scheduling Dionne Aleman INFORMS Journal on Computing
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On selection in finite populations David Earn Journal of Mathematical Biology
Prospective detection of foodborne illness outbreaks using machine learning approaches Sara McPhee-Knowles Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Epidemiology of pertussis in Alberta, Canada 2004-2015 Larry Svenson BMC Public Health
Incorporating equity in economic evaluations: a multi-attribute equity state approach Jeff Round European Journal of Health Economics
Statistical Alchemy: Conceptual Validity and Mapping to Generate Health State Utility Values Jeff Round PharmacoEconomics - Open
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Promoting independence, health and well-being for older people: A feasibility study of computer-aided health and social risk appraisal system in primary care Jeff Round BMC Family Practice
Sustained reduction in sexual behavior that may pose a risk of hiv transmission following diagnosis during early hiv infection among gay men in vancouver, british columbia Daniel Coombs AIDS and Behavior
Cancer incidence and mortality among the Métis population of Alberta, Canada Larry Svenson International Journal of Circumpolar Health
Progression From No AMD to Intermediate AMD as Influenced by Antioxidant Treatment and Genetic Risk: An Analysis of Data From the Age-Related Eye Disease Study Cataract Trial Rafal Kustra Journal of VitreoRetinal Diseases
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Novel modes of RNA editing in mitochondria Sandrine Moreira Nucleic Acids Research
SubtiList: The reference database for the Bacillus subtilis genome Sandrine Moreira Nucleic Acids Research
Revisiting a two-patch SIS model with infection during transport Julien Arino Mathematical Medicine and Biology
Weak convergence in the Prokhorov metric of methods for stochastic differential equations Paul Tupper IMA Journal of Numerical Analysis
Efficient p-value estimation in massively parallel testing problems Rafal Kustra Biostatistics
EM-random forest and new measures of variable importance for multi-locus quantitative trait linkage analysis Rafal Kustra Bioinformatics
PING 2.0: An R/Bioconductor package for nucleosome positioning using next-generation sequencing data Xuekui Zhang Bioinformatics
The senior transportation problem Dionne Aleman AAAI Workshop - Technical Report
Knowledge-Based provision of goods and services for people with social needs: Towards a virtual marketplace Dionne Aleman AAAI Workshop - Technical Report
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BC oysters and norovirus: Hundreds of cases in months with an “r” Natalie Prystajecky British Columbia Medical Journal
A modeling link between cognitive and biological homeostasis Paul Tupper CogSci 2017 - Proceedings of the 39th Annual Meeting of the Cognitive Science Society: Computational Foundations of Cognition
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Modeling stochastic anomalies in an SIS system Troy Day Stochastic Analysis and Applications
Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids Sandrine Moreira RNA Biology
Toward standardizing a lexicon of infectious disease modeling terms Julien Arino Frontiers in Public Health
A posteriori error analysis of two-stage computation methods with application to efficient discretization and the parareal algorithm Donald Estep SIAM Journal on Numerical Analysis
Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE): Epidemiology, emerging organisms, and economics Larry Svenson BMC Pediatrics
The Population Health Model (POHEM): An overview of rationale, methods and applications Michael Wolfson Population Health Metrics
Matching models of HIV-1 viral dynamics to clinical data Alexander Rutherford 2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2015
Aviation infrastructure investment and productivity growth Kate Harback AIAA/IEEE Digital Avionics Systems Conference - Proceedings
Data-fusion in clustering microarray data: Balancing discovery and interpretability Rafal Kustra IEEE/ACM Transactions on Computational Biology and Bioinformatics
Opinion strength influences the spatial dynamics of opinion formation Rebecca Tyson Journal of Mathematical Sociology
A discrete event simulation evaluation of distributed operating room scheduling Dionne Aleman IIE Transactions on Healthcare Systems Engineering
Live attenuated versus inactivated influenza vaccinein hutterite children a cluster randomized blinded trial David Earn Annals of Internal Medicine
Exploring Contingent Inequalities: Building the Theoretical Health Inequality Model Michael Wolfson Springer Series on Demographic Methods and Population Analysis
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Evolutionary stability in continuous nonlinear public goods games David Earn Journal of Mathematical Biology
A comprehensive method for ampliconbased and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples Natalie Prystajecky Microbiome
Disease eradication on large industrial farms Troy Day Journal of Mathematical Biology
HPV Vaccine utilization, Alberta 2008/09 - 2013/14 School year Larry Svenson BMC Infectious Diseases
Mechanistic models for the spatial spread of species under climate change Amy Hurford Ecological Applications
Profiling of vascular endothelial growth factor receptor heterogeneity identifies protein expression-defined subclasses of human non-small cell lung carcinoma Xuekui Zhang Anticancer Research
A Dynamic Neural Field Model of Speech Cue Compensation Paul Tupper Proceedings of the 38th Annual Meeting of the Cognitive Science Society, CogSci 2016
Which Learning Algorithms Can Generalize Identity-Based Rules to Novel Inputs? Paul Tupper Proceedings of the 38th Annual Meeting of the Cognitive Science Society, CogSci 2016
Growing food safety from the bottom up: An agent-based model of food safety inspections Sara McPhee-Knowles JASSS
A posteriori error estimation for a cut cell finite volume method with uncertain interface location Donald Estep International Journal for Uncertainty Quantification
Parameter estimation and prediction for groundwater contamination based on measure theory Donald Estep Water Resources Research
Cost-effectiveness of lung cancer screening in Canada Michael Wolfson JAMA Oncology
High incidence and increasing prevalence of multiple sclerosis in British Columbia, Canada: findings from over two decades (1991–2010) Larry Svenson Journal of Neurology
Exemplar dynamics and sound merger in language Paul Tupper SIAM Journal on Applied Mathematics
Development of the standards of reporting of neurological disorders (STROND) checklist: A guideline for the reporting of incidence and prevalence studies in neuroepidemiology Larry Svenson European Journal of Epidemiology
A posteriori analysis for iterative solvers for nonautonomous evolution problems Donald Estep SIAM-ASA Journal on Uncertainty Quantification
On a Perturbation Method for Stochastic Parabolic PDE Donald Estep Communications in Mathematics and Statistics
Multiple Enzyme Analyzer (MEA): Steps toward the in situ detection of microbial community ectoenzyme activities Brian Gaas Limnology and Oceanography: Methods
The prevalence of systemic autoimmune rheumatic diseases in Canadian pediatric populations: administrative database estimates Larry Svenson Rheumatology International
Chronic inflammatory arthritis prevalence estimates for children and adolescents in three Canadian provinces Larry Svenson Rheumatology International
Optimizing an HIV testing program using a system dynamics model of the continuum of care Alexander Rutherford Health Care Management Science
The interaction of iteration error and stability for linear partial differential equations coupled through an interface Donald Estep Advances in Mathematical Physics
Epidemiological implications of mobility between a large urban centre and smaller satellite cities Julien Arino Journal of Mathematical Biology
Automated high resolution ectoenzyme measurements: Instrument development and deployment in three trophic regimes Brian Gaas Limnology and Oceanography: Methods
Evaluation of metabolism models for free-water dissolved oxygen methods in lakes Sean Cornelius Limnology and Oceanography: Methods
Performance of the cancer risk management model lung cancer screening module Michael Wolfson Health Reports
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A posteriori error analysis for finite element methods with projection operators as applied to explicit time integration techniques Donald Estep BIT Numerical Mathematics
Using varieties of simulation modeling for criminal justice system analysis Alexander Rutherford Artificial Crime Analysis Systems: Using Computer Simulations and Geographic Information Systems
Modelling the dynamics of invasion and control of competing green crab genotypes Lisa Kanary Theoretical Ecology
Erratum to Polarization and the decline of the middle class: Canada and the U.S [J Econ Inequal, (2010), 8, (247-273) DOI 10.1007/s10888-009-9122-7] Michael Wolfson Journal of Economic Inequality
Mathematical Modelling to Evaluate Measures and Control the Spread of Illicit Drug Use Alexander Rutherford Mathematics in Industry
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High-Level Simulation Model of a Criminal Justice System Alexander Rutherford Intelligent Systems Reference Library
Sustainability in airspace system planning Kate Harback TR News
Developing a patent landscape methodology Sara McPhee-Knowles Queen Mary Journal of Intellectual Property
Impact of viral mutation on suppression of infection by cytotoxic T lymphocytes Julien Arino Canadian Applied Mathematics Quarterly
Serum PARC/CCL-18 concentrations and health outcomes in chronic obstructive pulmonary disease Xuekui Zhang American Journal of Respiratory and Critical Care Medicine
Entry and exit screening of airline travellers during the A(H1N1) 2009 pandemic: A retrospective evaluation Julien Arino Bulletin of the World Health Organization
A deterministic model of home and community care client counts in British Columbia Alexander Rutherford Health Care Management Science
Modeling sustainability of Arctic communities: An interdisciplinary collaboration of researchers and local knowledge holders Colin Daniel Ecosystems
The utility and predictive value of combinations of low penetrance genes for screening and risk prediction of colorectal cancer Rafal Kustra Human Genetics
A metapopulation model for malaria with transmission-blocking partial immunity in hosts Julien Arino Journal of Mathematical Biology
Identification and analysis of murine pancreatic islet enhancers Xuekui Zhang Diabetologia
Canonical correlation analysis based on Hilbert-Schmidt independence criterion and centered Kernel target alignment Rafal Kustra 30th International Conference on Machine Learning, ICML 2013
Predicting landscape vegetation dynamics using state-and-transition simulation models Colin Daniel USDA Forest Service - General Technical Report PNW-GTR
Introduction Colin Daniel USDA Forest Service - General Technical Report PNW-GTR
Dimensional scaling of quenching for flame propagation in random discrete media Caroline Wagner Proceedings of the International Astronautical Congress, IAC
Sonority and syllabification in a connectionist network: An analysis of BrbrNet Paul Tupper The Sonority Controversy
Predicting larval dispersal of the vase tunicate Ciona intestinalis in a Prince Edward Island estuary using a matrix population model Lisa Kanary Aquatic Invasions
Evaluating the effectiveness of SCUBA-based visual searches for an invasive tunicate, Ciona intestinalis, in a Prince Edward Island estuary Lisa Kanary Aquatic Invasions
The Influence of School Policies on Smoking Prevalence Among Students in Grades 5-9, Canada, 2004-2005 Alan Diener Preventing Chronic Disease
Bringing an economy-wide perspective to NextGen benefits analysis Kate Harback 9th AIAA Aviation Technology, Integration and Operations (ATIO) Conference, Aircraft Noise and Emissions Reduction Symposium (ANERS)
Continuous-time hidden Markov models for the copy number analysis of genotyping arrays Rafal Kustra Proceedings of the IADIS European Conference on Data Mining 2009, ECDM'09 Part of the IADIS Multi Conference on Computer Science and Information Systems, MCCSIS 2009
Exploration of high-dimensional time series using regularized reduced rank approach: Application in time-course microarray data analysis Rafal Kustra MCCSIS'08 - IADIS Multi Conference on Computer Science and Information Systems; Proceedings of Informatics 2008 and Data Mining 2008
Analysis of cost at FAA's en route centers: An empirical perspective Kate Harback Collection of Technical Papers - 7th AIAA Aviation Technology, Integration, and Operations Conference
Analysis of cost at FAA's en route centers: An empirical perspective Kate Harback Collection of Technical Papers - 7th AIAA Aviation Technology, Integration, and Operations Conference

Research Themes

Testing

Effective diagnostic testing serves at least four purposes: (i) diagnosis, (ii) surveillance, (iii) outbreak mitigation/control and (iv) screening (e.g., for access to long-term care (LTC) homes, etc.). COVID-19 has shown that it is critical to maximize testing capacity and to ensure that resources are optimally allocated across these four objectives. These have been challenges throughout the COVID-19 pandemic. Laying out the framework for testing capacity and allocation will build preparedness for emerging infectious diseases and potential pandemics, and may inform testing allocation for endemic infections in Canada.

Vaccination

The existence of COVID-19 vaccines highlights the importance of research on vaccination distribution strategies. CANMOD vaccination research will focus on (i) pandemic endgames, (ii) optimal deployment, (iii) behavioural dynamics and (iv) evaluation of vaccine programs. Although COVID-19 is our current priority, vaccination programs, their evaluation and their relationship to population behaviour are important for polio, measles, mumps, rubella, pertussis and other infections. Robust collaborations with public health institutions, and increased capacity in this area, will have a range of applications beyond the COVID-19 pandemic.

Genomics

Interest in establishing strong genomic surveillance programs for SARS-CoV-2 is intense, with the CanCoGen consortium planning to sequence 150,000 viral genomes in Canada. While virus genomes can describe the global context of introductions and origins of local clusters of cases, CANMOD will focus on building methods for characterizing and modelling local transmission once it is established, and for surveillance for viral determinants of increased fitness and of enhanced risk of spillover, virulence and transmission.

Heterogeneity and syndemics

Emerging infectious diseases impose disproportionate burdens according to societal fault lines marked by marginalization, socioeconomic disparities, injustices, and inequities. In some cases (e.g., COVID-19) this is marked by syndemics. We will build on and extend an existing cross-sectoral partnership including patient and family advisors to greatly enrich agent-based modeling (ABM), informed by those with lived experience. Specifically, in our COVID-19 Individual-level Geospatial Hybrid Model (CIGHM), we will improve consideration of geography (e.g., policy dis-coordination, clustering of events, EMS-overdose reporting data), enrichment with substance-use pathways, capturing homelessness, socioeconomic disruption and housing, and housing service delivery.

Behaviour

In infectious disease outbreaks we often see the population reacting to outbreak severity, changing the transmission dynamics over time. For example, the COVID-19 pandemic has led to voluntary and government-mandated physical distancing across the world, which slows spread. Further, we see these behaviours relax when case counts are low and increase when high. One way to partially account for these behaviours in a model is to include covariates such as Google mobility data to account for changes in population mobility, or vaccine uptake. However, such measures may miss out on important subpopulations (e.g., those who do not carry cell phones),behaviours such as mask wearing and a range of risk factors.

Smaller jurisdictions

CANMOD will develop mathematical models that: (i) are appropriate for provincial/territorial planning in smaller jurisdictions; (ii) explain how optimal public health response may be different in regions with a high proportion in imported cases; and (iii) explore how the different epidemic dynamics experienced in AC-T are influenced by the social dynamics of small and remote communities. Atlantic Canada and the territories (AC-T) have experienced different COVID-19 epidemic dynamics than the rest of Canada, with periods of no community spread and a higher portion of days with very few cases. In AC-T importations account for the majority of COVID-19 cases and outbreaks in AC-T have been extinguished when public health measures have been enacted.

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We acknowledge the support of the Natural Sciences and Engineering Research Council of Canada (NSERC).
Nous remercions le Conseil de recherches en sciences naturelles et en génie du Canada (CRSNG) de son soutien.